Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NI383_RS15550 Genome accession   NZ_CP099955
Coordinates   1563278..1564822 (-) Length   514 a.a.
NCBI ID   WP_025509792.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558278..1569822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS15530 (NI383_15690) - 1558292..1559722 (-) 1431 WP_315868598.1 lipopolysaccharide biosynthesis protein -
  NI383_RS15535 (NI383_15695) - 1559715..1560887 (-) 1173 WP_078533479.1 glycosyltransferase family 4 protein -
  NI383_RS15540 (NI383_15700) - 1560898..1562082 (-) 1185 WP_315868599.1 glycosyltransferase -
  NI383_RS15545 (NI383_15705) - 1562233..1563303 (-) 1071 WP_315868600.1 glycosyltransferase family 4 protein -
  NI383_RS15550 (NI383_15710) luxO 1563278..1564822 (-) 1545 WP_025509792.1 sigma-54 dependent transcriptional regulator Regulator
  NI383_RS15555 (NI383_15715) - 1565094..1565474 (-) 381 WP_025533201.1 Hpt domain-containing protein -
  NI383_RS15560 (NI383_15720) - 1565487..1566173 (-) 687 WP_021454342.1 CpsD/CapB family tyrosine-protein kinase -
  NI383_RS15565 (NI383_15725) - 1566173..1568239 (-) 2067 WP_049877691.1 SLBB domain-containing protein -
  NI383_RS15570 (NI383_15730) - 1568272..1569174 (-) 903 WP_140257802.1 OmpA family protein -
  NI383_RS15575 (NI383_15735) - 1569201..1569521 (-) 321 WP_005454817.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57448.29 Da        Isoelectric Point: 5.8567

>NTDB_id=603760 NI383_RS15550 WP_025509792.1 1563278..1564822(-) (luxO) [Vibrio parahaemolyticus strain Isc4A]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPVEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=603760 NI383_RS15550 WP_025509792.1 1563278..1564822(-) (luxO) [Vibrio parahaemolyticus strain Isc4A]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCAGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTG
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACTGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCGTTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCCCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477