Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K8L98_RS17295 Genome accession   NZ_CP082944
Coordinates   3500191..3501915 (-) Length   574 a.a.
NCBI ID   WP_223436593.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3495191..3506915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS17270 (K8L98_17255) - 3495240..3495386 (+) 147 WP_223436582.1 YycC family protein -
  K8L98_RS17275 (K8L98_17260) - 3495987..3496427 (-) 441 WP_223436584.1 cell wall hydrolase -
  K8L98_RS17280 (K8L98_17265) - 3496897..3497055 (-) 159 WP_223436586.1 YjcZ family sporulation protein -
  K8L98_RS26915 (K8L98_17270) - 3497359..3497478 (-) 120 WP_223436587.1 multicopper oxidase domain-containing protein -
  K8L98_RS17285 (K8L98_17275) spo0A 3497582..3498373 (-) 792 WP_223436589.1 sporulation transcription factor Spo0A -
  K8L98_RS17290 (K8L98_17280) spoIVB 3498676..3499965 (-) 1290 WP_223436591.1 SpoIVB peptidase -
  K8L98_RS17295 (K8L98_17285) recN 3500191..3501915 (-) 1725 WP_223436593.1 DNA repair protein RecN Machinery gene
  K8L98_RS17300 (K8L98_17290) ahrC 3501947..3502396 (-) 450 WP_223436595.1 transcriptional regulator AhrC/ArgR -
  K8L98_RS17305 (K8L98_17295) - 3502524..3503366 (-) 843 WP_223436597.1 TlyA family RNA methyltransferase -
  K8L98_RS17310 (K8L98_17300) dxs 3503370..3505262 (-) 1893 WP_223436599.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K8L98_RS17315 (K8L98_17305) - 3505568..3506452 (-) 885 WP_223436601.1 polyprenyl synthetase family protein -
  K8L98_RS17320 (K8L98_17310) - 3506452..3506685 (-) 234 WP_070876663.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64656.79 Da        Isoelectric Point: 4.9647

>NTDB_id=603751 K8L98_RS17295 WP_223436593.1 3500191..3501915(-) (recN) [Metabacillus dongyingensis strain BY2G20]
MLAELSIKNFAIIESLTVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSSEFVRYGEKRAELEGLFLLDDEKHPCIDR
CNEFGIDTSDGMIVLRRDISSSGKSICRINGKLVTIGILREIGQMIIDIHGQHDNQELMNEENHWKLLDQFGSGKINHAL
ASYREIYNTYAKLVKKIKQLSENEQEMAHRLDLIQFQLEEIEKADLKIKEDERLMEEKSQISNFEKIFESLQNSYNALHG
EQRGLDYIGHSMSQLEEVSAINDSLKEMSETISNCYYMLEDLSFQIRNELDQLEFDPERLNEIETRLGEITHLKRKYGQD
VEEILEYAAAIEEEIDTIQNRDSHLFKLKNELDSLVKDLIVEAKNVTAVRKKSAAELTKQIQRELKELYMEKTKFEVVFS
VRQGSKDAPQIDGVPAKFGENGVDETEFYISTNPGEPLKPLSKIASGGELSRIMLAMKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYKVSVGSQVLCITHLPQVAAMADTHLFISKETVKGRTKTSVKPLLEEEKIKEVGRMIAGVEVTDLTKQH
AKELLALADTVKSL

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=603751 K8L98_RS17295 WP_223436593.1 3500191..3501915(-) (recN) [Metabacillus dongyingensis strain BY2G20]
GTGTTAGCGGAACTTTCAATAAAAAACTTTGCAATCATTGAATCATTGACTGTCTCCTTTGAGAAAGGGCTGACAGTACT
AACTGGAGAAACCGGAGCAGGGAAATCCATTATCATTGATGCCGTCCATTTGCTTGTCGGCGGAAGAGGCTCATCTGAAT
TTGTTCGTTACGGGGAGAAACGTGCTGAATTAGAGGGTCTTTTTTTACTTGATGATGAAAAACATCCATGTATAGACAGA
TGCAATGAATTTGGAATCGACACGAGCGACGGCATGATTGTTTTAAGACGCGACATTTCATCCTCGGGAAAAAGCATTTG
CCGTATTAACGGGAAGCTTGTAACCATTGGAATTCTCAGGGAAATCGGACAAATGATTATTGATATTCATGGACAGCATG
ACAATCAGGAGCTTATGAACGAAGAAAATCACTGGAAGCTTCTCGATCAGTTCGGTTCCGGAAAAATTAATCATGCTCTT
GCTTCATACAGAGAAATTTACAATACATATGCTAAGCTCGTGAAAAAAATAAAACAGCTGTCTGAAAATGAACAGGAAAT
GGCCCACAGGCTTGACTTGATTCAATTTCAGCTTGAAGAAATAGAAAAGGCAGATTTGAAAATCAAGGAAGATGAGCGGC
TTATGGAGGAAAAAAGCCAAATATCCAACTTTGAAAAAATATTTGAATCACTTCAAAACAGCTATAATGCCTTGCACGGC
GAGCAAAGAGGGCTAGATTATATTGGACATTCCATGAGTCAATTAGAAGAGGTATCAGCTATTAATGACTCGCTGAAAGA
AATGTCCGAAACCATTTCGAACTGCTATTACATGCTTGAGGATTTATCCTTTCAGATTCGAAATGAGCTCGATCAATTGG
AATTTGATCCAGAGCGGTTGAATGAAATTGAAACAAGACTTGGCGAAATTACGCATCTCAAAAGAAAATACGGACAGGAT
GTAGAAGAAATCCTTGAATATGCAGCAGCAATTGAAGAGGAAATAGATACAATCCAAAACCGTGACAGTCATTTGTTCAA
GCTGAAAAACGAGTTAGACAGCCTTGTGAAAGATCTTATCGTTGAAGCAAAGAACGTGACAGCCGTCCGGAAAAAAAGTG
CTGCTGAGCTGACGAAGCAAATTCAGCGGGAGCTGAAAGAATTATATATGGAAAAAACAAAATTTGAAGTTGTTTTTAGT
GTTAGGCAAGGCAGCAAGGATGCACCTCAAATTGATGGTGTCCCTGCGAAATTTGGTGAAAATGGTGTGGATGAAACGGA
ATTTTACATATCGACAAATCCTGGAGAACCATTAAAGCCGCTTTCTAAAATTGCTTCTGGCGGAGAGCTTTCAAGAATCA
TGCTTGCAATGAAAAGCATCTTTTCAAAGCATCAGGGTGTCACCTCAATTATTTTTGATGAAGTGGATACAGGTGTCAGC
GGCCGTGTCGCCCAGGCGATTGCAGAAAAAATCTATAAAGTATCTGTCGGTTCGCAAGTGCTTTGTATTACACATCTTCC
GCAAGTTGCGGCAATGGCCGATACACACCTTTTCATTTCAAAAGAAACAGTTAAAGGAAGAACCAAAACAAGCGTAAAAC
CTCTTTTAGAAGAGGAAAAAATAAAAGAAGTCGGCAGGATGATTGCCGGCGTTGAAGTAACGGATTTAACAAAACAGCAT
GCAAAAGAACTGCTGGCTCTTGCTGATACGGTCAAGAGCCTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

70.261

100

0.704