Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K8L98_RS09270 Genome accession   NZ_CP082944
Coordinates   1876630..1877013 (+) Length   127 a.a.
NCBI ID   WP_275976758.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1871630..1882013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS09250 (K8L98_09265) - 1872656..1873765 (+) 1110 WP_223441570.1 GerAB/ArcD/ProY family transporter -
  K8L98_RS09255 (K8L98_09270) - 1873762..1874883 (+) 1122 WP_223441573.1 Ger(x)C family spore germination protein -
  K8L98_RS09260 (K8L98_09275) - 1874982..1875344 (+) 363 WP_223441575.1 cytochrome-c oxidase -
  K8L98_RS26565 - 1875537..1875671 (-) 135 WP_275976749.1 hypothetical protein -
  K8L98_RS09265 (K8L98_09280) - 1875739..1876293 (-) 555 WP_223441577.1 GNAT family N-acetyltransferase -
  K8L98_RS09270 (K8L98_09285) nucA/comI 1876630..1877013 (+) 384 WP_275976758.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K8L98_RS09275 (K8L98_09290) comJ 1877037..1877450 (+) 414 WP_223441582.1 competence protein ComJ -
  K8L98_RS09280 (K8L98_09295) - 1877661..1879565 (+) 1905 WP_223441584.1 heavy metal translocating P-type ATPase -
  K8L98_RS09285 (K8L98_09300) - 1879600..1879803 (-) 204 WP_223441586.1 hypothetical protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13750.11 Da        Isoelectric Point: 4.0277

>NTDB_id=603744 K8L98_RS09270 WP_275976758.1 1876630..1877013(+) (nucA/comI) [Metabacillus dongyingensis strain BY2G20]
MALAGLLEGLAPGKAAAYSAYDEILYFLMDRYPETGDHVRDAIAAGHSDVCTIERDGAEERREESLAGIPTETGYDRDEW
PMAMCEEGGAGASVRYVTPSDNRGAGAWVGNQLENYPDGTRVLFITD

Nucleotide


Download         Length: 384 bp        

>NTDB_id=603744 K8L98_RS09270 WP_275976758.1 1876630..1877013(+) (nucA/comI) [Metabacillus dongyingensis strain BY2G20]
ATGGCACTCGCAGGTTTACTTGAGGGACTGGCTCCCGGGAAAGCTGCTGCTTATTCGGCCTATGATGAAATCTTATATTT
TCTTATGGATAGGTACCCTGAAACAGGAGATCATGTCAGGGACGCCATTGCTGCCGGGCACTCCGATGTGTGTACGATTG
AACGTGATGGAGCAGAGGAGAGAAGGGAAGAGAGCCTTGCCGGAATCCCTACTGAGACTGGATACGATCGAGATGAATGG
CCGATGGCTATGTGCGAAGAAGGAGGAGCAGGTGCATCAGTCCGCTATGTCACTCCATCTGATAATCGCGGAGCAGGTGC
GTGGGTCGGCAATCAGCTTGAGAATTATCCTGACGGCACGAGGGTTTTATTTATCACTGACTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.602

96.85

0.606