Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NI380_RS24105 Genome accession   NZ_CP099934
Coordinates   2220934..2221209 (+) Length   91 a.a.
NCBI ID   WP_025637826.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215934..2226209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS10450 (NI380_10800) - 2217021..2218658 (-) 1638 WP_021453313.1 methyl-accepting chemotaxis protein -
  NI380_RS10455 (NI380_10805) - 2219425..2219946 (+) 522 WP_308386191.1 helix-turn-helix domain-containing protein -
  NI380_RS10460 (NI380_10810) - 2220651..2220869 (+) 219 WP_025637825.1 hypothetical protein -
  NI380_RS24105 sinR 2220934..2221209 (+) 276 WP_025637826.1 helix-turn-helix domain-containing protein Regulator
  NI380_RS10465 (NI380_10815) - 2221202..2222341 (+) 1140 WP_140204052.1 reverse transcriptase family protein -
  NI380_RS10470 (NI380_10820) - 2222319..2223401 (-) 1083 WP_308386192.1 tyrosine-type recombinase/integrase -
  NI380_RS10480 (NI380_10830) - 2223817..2224266 (-) 450 WP_005459815.1 L-alanine exporter AlaE -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10103.79 Da        Isoelectric Point: 4.2583

>NTDB_id=603731 NI380_RS24105 WP_025637826.1 2220934..2221209(+) (sinR) [Vibrio parahaemolyticus strain BM26A]
MLPIGQTIKELRLLKGLSLSQVAQLSDMDKSYLSKIENDKRDPSITSLEKICAAIEIPLSILILMCDENEDGPFSVLTDE
LKELAREIISA

Nucleotide


Download         Length: 276 bp        

>NTDB_id=603731 NI380_RS24105 WP_025637826.1 2220934..2221209(+) (sinR) [Vibrio parahaemolyticus strain BM26A]
ATGTTACCTATCGGACAAACCATAAAAGAGCTGAGACTACTTAAAGGGCTATCCTTAAGCCAAGTCGCACAGCTATCCGA
CATGGACAAATCGTACCTATCAAAGATAGAGAACGACAAAAGAGACCCTTCGATAACCTCCCTAGAAAAAATATGTGCCG
CAATAGAGATTCCGCTTAGCATATTGATACTAATGTGCGATGAAAATGAAGATGGGCCATTCAGCGTACTAACCGATGAA
TTAAAAGAGTTGGCAAGAGAAATAATTAGTGCATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

38.889

98.901

0.385