Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NI380_RS02770 Genome accession   NZ_CP099934
Coordinates   571324..573318 (+) Length   664 a.a.
NCBI ID   WP_005493886.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 566324..578318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS02745 (NI380_02745) rsmE 566476..567207 (-) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NI380_RS02750 (NI380_02750) endA 567332..568027 (-) 696 WP_005493878.1 deoxyribonuclease I -
  NI380_RS02755 (NI380_02755) - 568147..568644 (-) 498 WP_025554527.1 SprT family zinc-dependent metalloprotease -
  NI380_RS02760 (NI380_02760) - 568711..569508 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NI380_RS02765 (NI380_02765) metK 569853..571007 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  NI380_RS02770 (NI380_02770) recP/tkt 571324..573318 (+) 1995 WP_005493886.1 transketolase Machinery gene
  NI380_RS02775 (NI380_02775) - 573397..574290 (-) 894 WP_024702509.1 LysR family transcriptional regulator -
  NI380_RS02780 (NI380_02780) - 574427..576385 (+) 1959 WP_005493890.1 ligand-gated channel protein -
  NI380_RS02785 (NI380_02785) epd 576516..577553 (+) 1038 WP_308386326.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71997.15 Da        Isoelectric Point: 4.7995

>NTDB_id=603667 NI380_RS02770 WP_005493886.1 571324..573318(+) (recP/tkt) [Vibrio parahaemolyticus strain BM26A]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGAYILKDSEGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=603667 NI380_RS02770 WP_005493886.1 571324..573318(+) (recP/tkt) [Vibrio parahaemolyticus strain BM26A]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGTTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTTAACAAAGAAGGCCACGACATCATTGACCACTTCACTTACGTGTTCATGGGTGATGGTTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACTCTAGGCCTGGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CAGCGGTAGATGGCCATGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCGGATCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGCGCACCATTAGGCGCTGA
AGAAATCGCAGCAGCGCGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCAGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAACGGCGAACTTCCTGCAGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCAGAAT
TCATGGGCGGCTCTGCTGACCTAGCACCTTCTAACCTAACCATGTGGTCGGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGCGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTTTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAGCAAATGGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGCAGCGCTGAGCAAGTCG
CAGACATCGCGAAAGGTGCTTACATCCTGAAAGACAGTGAAGGTAAGCCTGAGCTAATCCTTATCGCAACAGGTTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAGCAACTAACAGCAGAAGGTAAGAAAGTACGCGTGGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCTCGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(544-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.554

98.946

0.48