Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NI384_RS07745 Genome accession   NZ_CP099928
Coordinates   1657340..1658884 (+) Length   514 a.a.
NCBI ID   WP_308385096.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652340..1663884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS07720 (NI384_07810) - 1652642..1652962 (+) 321 WP_005454817.1 STAS domain-containing protein -
  NI384_RS07725 (NI384_07815) - 1652989..1653891 (+) 903 WP_043044194.1 OmpA family protein -
  NI384_RS07730 (NI384_07820) - 1653924..1655990 (+) 2067 WP_049877691.1 SLBB domain-containing protein -
  NI384_RS07735 (NI384_07825) - 1655990..1656676 (+) 687 WP_029838242.1 CpsD/CapB family tyrosine-protein kinase -
  NI384_RS07740 (NI384_07830) - 1656689..1657069 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  NI384_RS07745 (NI384_07835) luxO 1657340..1658884 (+) 1545 WP_308385096.1 sigma-54 dependent transcriptional regulator Regulator
  NI384_RS07750 (NI384_07840) - 1658859..1659929 (+) 1071 WP_308385097.1 glycosyltransferase family 4 protein -
  NI384_RS07755 (NI384_07845) - 1660080..1661264 (+) 1185 WP_025818378.1 glycosyltransferase -
  NI384_RS07760 (NI384_07850) - 1661275..1662447 (+) 1173 WP_025818379.1 glycosyltransferase family 4 protein -
  NI384_RS07765 (NI384_07855) - 1662440..1663870 (+) 1431 WP_025818380.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57433.27 Da        Isoelectric Point: 5.8567

>NTDB_id=603604 NI384_RS07745 WP_308385096.1 1657340..1658884(+) (luxO) [Vibrio parahaemolyticus strain BM24B]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVTLHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEAPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=603604 NI384_RS07745 WP_308385096.1 1657340..1658884(+) (luxO) [Vibrio parahaemolyticus strain BM24B]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCAGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGACACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTTGGTGAAAGTGGCACGGGCAAAGAAGTGTGCGCCGAGGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGTGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCACA
ACACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCGCAACAAACACAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477