Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NI384_RS04580 Genome accession   NZ_CP099928
Coordinates   968629..969228 (+) Length   199 a.a.
NCBI ID   WP_025553812.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 963629..974228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS04555 - 964781..964912 (+) 132 WP_005380608.1 hypothetical protein -
  NI384_RS04560 (NI384_04555) - 964985..965332 (+) 348 WP_023585236.1 YbaN family protein -
  NI384_RS04565 (NI384_04560) apt 965498..966043 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  NI384_RS04570 (NI384_04565) dnaX 966052..968187 (+) 2136 WP_308385446.1 DNA polymerase III subunit gamma/tau -
  NI384_RS04575 (NI384_04570) - 968270..968599 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  NI384_RS04580 (NI384_04575) recR 968629..969228 (+) 600 WP_025553812.1 recombination mediator RecR Machinery gene
  NI384_RS04585 (NI384_04580) aqpZ 969280..969978 (-) 699 WP_005460095.1 aquaporin Z -
  NI384_RS04590 (NI384_04585) - 970185..971444 (-) 1260 WP_005494432.1 amino acid permease -
  NI384_RS04595 (NI384_04590) - 971762..972142 (+) 381 WP_308385447.1 RidA family protein -
  NI384_RS04600 (NI384_04595) - 972158..973435 (+) 1278 WP_005479508.1 serine dehydratase subunit alpha family protein -
  NI384_RS04605 (NI384_04600) - 973464..974123 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.70 Da        Isoelectric Point: 5.7468

>NTDB_id=603592 NI384_RS04580 WP_025553812.1 968629..969228(+) (recR) [Vibrio parahaemolyticus strain BM24B]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=603592 NI384_RS04580 WP_025553812.1 968629..969228(+) (recR) [Vibrio parahaemolyticus strain BM24B]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAAGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437