Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NI384_RS02460 Genome accession   NZ_CP099928
Coordinates   505294..507288 (+) Length   664 a.a.
NCBI ID   WP_193263167.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500294..512288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS02435 (NI384_02435) rsmE 500446..501177 (-) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NI384_RS02440 (NI384_02440) endA 501302..501997 (-) 696 WP_005493878.1 deoxyribonuclease I -
  NI384_RS02445 (NI384_02445) - 502117..502614 (-) 498 WP_015297290.1 SprT family zinc-dependent metalloprotease -
  NI384_RS02450 (NI384_02450) - 502681..503478 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NI384_RS02455 (NI384_02455) metK 503823..504977 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  NI384_RS02460 (NI384_02460) recP/tkt 505294..507288 (+) 1995 WP_193263167.1 transketolase Machinery gene
  NI384_RS02465 (NI384_02465) - 507366..508259 (-) 894 WP_005493888.1 LysR family transcriptional regulator -
  NI384_RS02470 (NI384_02470) - 508396..510354 (+) 1959 WP_046268051.1 ligand-gated channel protein -
  NI384_RS02475 (NI384_02475) epd 510485..511522 (+) 1038 WP_046268050.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71890.00 Da        Isoelectric Point: 4.7973

>NTDB_id=603579 NI384_RS02460 WP_193263167.1 505294..507288(+) (recP/tkt) [Vibrio parahaemolyticus strain BM24B]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGALLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQIA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGAYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=603579 NI384_RS02460 WP_193263167.1 505294..507288(+) (recP/tkt) [Vibrio parahaemolyticus strain BM24B]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCCGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGATCACTTCACTTACGTGTTCATGGGCGATGGCTGTCTAATGGAA
GGTATCTCGCACGAGGCTTGTTCTCTTGCTGGTACACTAGGCCTAGGTAAACTGATCGCATTCTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGACACGCCTAAGCGTTTTGAAGCTTACGGTTGGCACGTAATCC
CAGCAGTAGATGGCCACGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGATCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGCGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCGCGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTTAACGGCGAACTTCCTGCAGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAACGCTCTAGAGGCATTTGGTGCTCTACTACCTGAAT
TCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACCATGTGGTCTGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATCATGAACGGTATCGCACTACACGGTGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTCTGATGAAAATTC
AGAACATCCAAGTGTACACACACGACTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAACAAATCGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGTAGCGCTGAGCAAGTTG
CAGACATCGCGAAAGGTGCTTACATCCTGAAAGACAGCGATGGCAAACCTGAGCTAATCCTAATCGCAACAGGCTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAACAACTAACCGCAGAAGGTAAGAAAGTACGCGTTGTTTCAATGCCATCAACTGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACCTTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(545-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.706

98.946

0.482