Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   HK74_RS07790 Genome accession   NC_021834
Coordinates   1484031..1484468 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni 32488     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479031..1489468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK74_RS07770 (M635_07725) kdpD 1479421..1481343 (+) 1923 WP_020837026.1 DUF4118 domain-containing protein -
  HK74_RS07775 (M635_07730) uvrB 1481445..1483418 (-) 1974 WP_002924628.1 excinuclease ABC subunit UvrB -
  HK74_RS07780 (M635_07735) - 1483572..1483802 (+) 231 WP_002852327.1 hypothetical protein -
  HK74_RS07785 (M635_07740) - 1483792..1484034 (+) 243 WP_002854947.1 hypothetical protein -
  HK74_RS07790 (M635_07745) Cj0683 1484031..1484468 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HK74_RS07795 (M635_07750) priA 1484450..1486303 (+) 1854 WP_002860009.1 primosomal protein N' -
  HK74_RS07800 (M635_07755) cipA 1486313..1487707 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  HK74_RS07805 (M635_07760) ispG 1487853..1488926 (+) 1074 WP_020837027.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=60351 HK74_RS07790 WP_002852324.1 1484031..1484468(+) (Cj0683) [Campylobacter jejuni 32488]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=60351 HK74_RS07790 WP_002852324.1 1484031..1484468(+) (Cj0683) [Campylobacter jejuni 32488]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAATAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment