Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K7887_RS13795 Genome accession   NZ_CP082918
Coordinates   2680378..2682084 (-) Length   568 a.a.
NCBI ID   WP_223489936.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain BAT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2675378..2687084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7887_RS13765 (K7887_13740) - 2675984..2676226 (+) 243 WP_223489928.1 DUF2627 domain-containing protein -
  K7887_RS13770 (K7887_13745) - 2676255..2676980 (-) 726 WP_223489930.1 glycerophosphodiester phosphodiesterase -
  K7887_RS13775 (K7887_13750) - 2677073..2677228 (+) 156 WP_010194889.1 YycC family protein -
  K7887_RS13780 (K7887_13755) spo0A 2677324..2678115 (-) 792 WP_088018747.1 sporulation transcription factor Spo0A -
  K7887_RS13785 (K7887_13760) spoIVB 2678389..2679684 (-) 1296 WP_223489932.1 SpoIVB peptidase -
  K7887_RS13790 (K7887_13765) - 2680078..2680269 (-) 192 WP_223489934.1 hypothetical protein -
  K7887_RS13795 (K7887_13770) recN 2680378..2682084 (-) 1707 WP_223489936.1 DNA repair protein RecN Machinery gene
  K7887_RS13800 (K7887_13775) ahrC 2682107..2682556 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  K7887_RS13805 (K7887_13780) - 2682649..2683485 (-) 837 WP_223489938.1 TlyA family RNA methyltransferase -
  K7887_RS13810 (K7887_13785) dxs 2683492..2685384 (-) 1893 WP_223489940.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K7887_RS13815 (K7887_13790) - 2685407..2686006 (-) 600 WP_223489942.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64255.96 Da        Isoelectric Point: 4.9366

>NTDB_id=603503 K7887_RS13795 WP_223489936.1 2680378..2682084(-) (recN) [Sutcliffiella horikoshii strain BAT]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDEKHPAYRV
CQELGIEIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGAAVQKEL
KEYRNIYSSFKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNVQLTVNEEDELLEERNKISNYERLYQSLNNCYHAMHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGTT
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNMD
VKKEKASGDAVFSKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=603503 K7887_RS13795 WP_223489936.1 2680378..2682084(-) (recN) [Sutcliffiella horikoshii strain BAT]
ATGATTGCTGAATTAACCATTAAAAATTTTGCTATTATTGAATCCCTTTCTGTTTCTTTTGACAAAGGGTTAACGGTTTT
AACCGGGGAGACCGGAGCGGGTAAATCCATTATCATTGATGCCATCCACTTGCTGGCGGGTGGACGTGGTTCACATGAGT
TCGTCCGTTTCGGTGAAAAACGAGCGGAACTCGAAGGCTTGTTCCTTCTTGAAGATGAGAAGCATCCTGCCTATAGAGTT
TGTCAGGAGCTTGGTATTGAGATAGAAGACGAGATGGTTGTCTTGAGACGGGAAATTCATGCTACAGGCAAAAGTGTTTG
CCGTGTTAATGGAAAGCTTGTCACCATAGCCCTGTTACGGGAAGTCGGTCAGACATTGGTGGACATTCATGGGCAGCACG
AACACCAGGAACTGATGGACCCGGACTTGCATCTTTCGCTTTTAGATCAGTTTGGAGGAGCGGCTGTTCAAAAGGAACTT
AAAGAGTATAGGAACATTTATTCATCTTTTAAGGATGTAGAAAAAAGGCTGCTTGAACTCACGGAAAATGAACAAAAGGT
TGCACATCGACTTGATTTGTTGCAGTTCCAAGCAGAAGAAATCAGCAATGTGCAATTAACCGTCAATGAAGAAGACGAGC
TGCTCGAGGAACGGAATAAAATCAGTAACTATGAACGACTTTACCAATCGCTCAACAACTGTTACCATGCGATGCACGGC
GAACAAAAGGGACTTGATTGGGTCGGACAAGCCATGTCTGAATCCGAGGGTCTCGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCCAATTCTTATTATCAATTAGAAGAACTATCTTATCGTATTAGAGATGAAATAGATCAGCTTG
AGTTTGATCCAAACCGCCTTGATTTTATTGAAGGAAGACTGAATGAAATCAAACAATTGAAACGGAAATACGGAACTACG
GTTGCTGAAGTCTTAGAATATGCTTCGAAAATAGAAGAGGAGCTAGAGACGCTGCAAAACCGTGATTCGCACATTCACCA
GCTGCAGGAGTCTCTTGAGTCGCTTAAACAAGATCTTGCACTTGAAGCAAAATCGCTTACTGATGCCCGTAGAAAAGCCT
CAGAGAAACTAATGAAGAGCATTCATAAAGAGCTCAAAGACCTGTACTTGGAAAAAGCTATTTTTGATGTGAACATGGAC
GTGAAAAAGGAAAAGGCGTCAGGTGATGCGGTGTTTAGTAAAAACGGCGTGGATGTTGTGGAGTTCTACCTTACAACAAA
CCCGGGGGAACCATTGAAGCCGATGGCAAAAGTAGCTTCAGGCGGGGAACTTTCGAGGATCATGCTTGCATTGAAGAGTA
TCTTCTCAAGACACCAAGGGATCACTTCCATCATTTTTGATGAAGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTCTCGGTTGATTCACAAGTCCTTTGTATCTCCCACTTACCTCAAGTTGCTGCGATGTC
AGACACCCATCTATTCATCAGCAAGGAAGTCTCCGGTGAACGCACGAAAACCAAAGTGCGCGGACTGGATCAGGACGAAA
AGGTGCGTGAAATCGGCCGGATGATTTCTGGCGTGGAGATTACTTCGTTGACGAAGGAGCATGCACGCGAGTTGTTGGAG
ATTGCCGGGAGTATTAAGCAGGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

100

0.604