Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NI386_RS10610 Genome accession   NZ_CP099924
Coordinates   518202..520196 (+) Length   664 a.a.
NCBI ID   WP_140114687.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513202..525196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS10585 (NI386_10560) rsmE 513356..514123 (-) 768 WP_308391288.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NI386_RS10590 (NI386_10565) endA 514210..514905 (-) 696 WP_021823257.1 deoxyribonuclease I -
  NI386_RS10595 (NI386_10570) - 515025..515522 (-) 498 WP_308390575.1 SprT family zinc-dependent metalloprotease -
  NI386_RS10600 (NI386_10575) - 515589..516386 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NI386_RS10605 (NI386_10580) metK 516731..517885 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  NI386_RS10610 (NI386_10585) recP/tkt 518202..520196 (+) 1995 WP_140114687.1 transketolase Machinery gene
  NI386_RS10615 (NI386_10590) - 520274..521167 (-) 894 WP_005493888.1 LysR family transcriptional regulator -
  NI386_RS10620 (NI386_10595) - 521304..523262 (+) 1959 WP_308390576.1 ligand-gated channel protein -
  NI386_RS10625 (NI386_10600) epd 523393..524430 (+) 1038 WP_308390577.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 72045.15 Da        Isoelectric Point: 4.7655

>NTDB_id=603494 NI386_RS10610 WP_140114687.1 518202..520196(+) (recP/tkt) [Vibrio parahaemolyticus strain Isc7]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQERTAEQVTDIAKGGYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=603494 NI386_RS10610 WP_140114687.1 518202..520196(+) (recP/tkt) [Vibrio parahaemolyticus strain Isc7]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGATCACTTCACTTACGTGTTCATGGGTGATGGCTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACGCTAGGCCTAGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CAGCAGTAGATGGCCATGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCACCAAACAAATCGGGTTCACACGACTGTCACGGTGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCACGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAACGGCGAACTTCCTGCAGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCAGAAT
TCATGGGCGGCTCTGCTGACCTAGCACCTTCTAACCTAACCATGTGGTCTGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGCGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTTTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAGCAAATGGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAAGAGCGTACTGCAGAGCAAGTTA
CAGACATCGCGAAAGGTGGTTACATCCTGAAAGACAGCGATGGCAAACCTGAGCTAATCCTTATCGCAACAGGCTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAACAACTAACAGCAGAAGGTAAGAAAGTACGCGTGGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTTGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(541-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.706

98.946

0.482