Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K7887_RS06855 Genome accession   NZ_CP082918
Coordinates   1338043..1339005 (+) Length   320 a.a.
NCBI ID   WP_223492800.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain BAT     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333043..1344005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7887_RS06830 (K7887_06820) - 1334294..1335508 (+) 1215 WP_223492795.1 putative glycoside hydrolase -
  K7887_RS06835 (K7887_06825) - 1335666..1336310 (+) 645 WP_223492796.1 hypothetical protein -
  K7887_RS06840 (K7887_06830) - 1336379..1336564 (-) 186 WP_223492797.1 hypothetical protein -
  K7887_RS06845 (K7887_06835) - 1336735..1337310 (+) 576 WP_223492798.1 N-acetyltransferase -
  K7887_RS06850 (K7887_06840) - 1337436..1337879 (+) 444 WP_223492799.1 MarR family winged helix-turn-helix transcriptional regulator -
  K7887_RS06855 (K7887_06845) ceuB 1338043..1339005 (+) 963 WP_223492800.1 ABC transporter permease Machinery gene
  K7887_RS06860 (K7887_06850) - 1338989..1339945 (+) 957 WP_223492801.1 iron chelate uptake ABC transporter family permease subunit -
  K7887_RS06865 (K7887_06855) - 1339933..1340691 (+) 759 WP_223492802.1 ABC transporter ATP-binding protein -
  K7887_RS06870 (K7887_06860) - 1340849..1341817 (+) 969 WP_223492803.1 siderophore ABC transporter substrate-binding protein -
  K7887_RS06875 (K7887_06865) - 1341914..1342645 (-) 732 WP_223492804.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35597.08 Da        Isoelectric Point: 10.0435

>NTDB_id=603492 K7887_RS06855 WP_223492800.1 1338043..1339005(+) (ceuB) [Sutcliffiella horikoshii strain BAT]
MKKRYLFILLITLSFISLFVGVTEIQPWKLWQGISEQQLQVLLLSRIPRLLSIIIAGIGMSVCGLIMQQLTRNKFVSPTT
AGTMDSARLGVLVSLLLFSSAGMLLKASIAFFFALAGTFIFMKILDRIKFKDLIFIPLVGLMFGSIIGSITTFFAYKYDL
IQNMSSWLQGNFSLIIKGRYELLYISIPLLIITYLYANRFTVAGMGEDFSINLGLPYKQVVNIGLVIVAAVTSIVILTVG
MIPFLGLIVPNIVSIFRGDHLKENLPYTAMIGAIFVLACDILGRIIIYPYEIPIGLTVGVIGSALFLYLLFRRSIYEAKT

Nucleotide


Download         Length: 963 bp        

>NTDB_id=603492 K7887_RS06855 WP_223492800.1 1338043..1339005(+) (ceuB) [Sutcliffiella horikoshii strain BAT]
ATGAAGAAAAGGTATCTATTCATCTTGCTAATTACATTATCTTTTATCTCTTTATTTGTTGGGGTAACGGAAATACAACC
TTGGAAATTGTGGCAGGGAATAAGTGAACAGCAACTCCAGGTTCTCTTGCTTAGTAGAATCCCGAGACTGCTAAGCATTA
TTATCGCTGGTATTGGAATGAGTGTTTGTGGCCTGATTATGCAGCAGCTGACTAGGAATAAATTTGTCTCACCAACTACT
GCTGGAACAATGGACTCTGCAAGACTCGGAGTGTTAGTATCCCTCTTGCTTTTTTCTTCTGCCGGAATGTTACTTAAAGC
TTCCATTGCCTTTTTCTTTGCTTTGGCAGGGACGTTCATTTTCATGAAGATTTTAGACAGGATTAAATTCAAGGATCTCA
TTTTCATCCCGCTAGTGGGGCTGATGTTTGGAAGTATTATAGGGTCCATCACCACATTTTTTGCTTATAAATATGACCTT
ATTCAAAATATGTCGTCTTGGTTGCAGGGGAATTTCTCGCTAATTATTAAAGGAAGATACGAGCTGCTTTACATAAGTAT
TCCATTGCTTATCATTACATATCTTTATGCAAACAGATTTACCGTTGCAGGTATGGGAGAAGACTTCTCGATTAATCTAG
GACTGCCGTATAAACAGGTAGTAAACATTGGACTTGTCATAGTGGCAGCTGTGACATCTATCGTCATCCTGACAGTAGGC
ATGATACCATTTCTTGGCCTGATTGTGCCAAATATTGTGAGTATTTTTCGGGGAGATCATCTGAAAGAGAATCTGCCATA
CACTGCGATGATTGGAGCAATTTTTGTCCTTGCATGCGATATTCTCGGTAGAATTATCATTTATCCTTACGAAATACCAA
TTGGTCTGACTGTCGGCGTAATAGGTAGTGCGTTATTTCTTTATCTTTTGTTTAGGAGAAGTATATATGAAGCTAAAACA
TAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.911

98.125

0.509