Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   DAECLI1_RS03935 Genome accession   NZ_AP018784
Coordinates   809956..811125 (-) Length   389 a.a.
NCBI ID   WP_126347417.1    Uniprot ID   -
Organism   Escherichia coli strain SK1144     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 804956..816125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAECLI1_RS03920 - 805640..806674 (-) 1035 Protein_770 IS481 family transposase -
  DAECLI1_RS03925 (DAECLI1_07680) kfiC 806835..808397 (+) 1563 WP_001305085.1 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  DAECLI1_RS03930 (DAECLI1_07690) kfiD 808439..809617 (+) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  DAECLI1_RS03935 (DAECLI1_07700) kpsS 809956..811125 (-) 1170 WP_126347417.1 capsule biosynthesis protein Regulator
  DAECLI1_RS03940 (DAECLI1_07710) - 811160..813187 (-) 2028 WP_000579513.1 capsular polysaccharide biosynthesis protein -
  DAECLI1_RS03945 (DAECLI1_07720) kdsB 813184..813924 (-) 741 WP_001576334.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DAECLI1_RS03950 (DAECLI1_07730) - 813934..815610 (-) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46371.56 Da        Isoelectric Point: 10.0934

>NTDB_id=60348 DAECLI1_RS03935 WP_126347417.1 809956..811125(-) (kpsS) [Escherichia coli strain SK1144]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGSRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=60348 DAECLI1_RS03935 WP_126347417.1 809956..811125(-) (kpsS) [Escherichia coli strain SK1144]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGAGCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.589

100

0.396

Multiple sequence alignment