Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NI386_RS08670 Genome accession   NZ_CP099924
Coordinates   118167..119396 (+) Length   409 a.a.
NCBI ID   WP_058664673.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113167..124396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS08630 (NI386_08605) - 113467..113796 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  NI386_RS08635 (NI386_08610) - 114038..114406 (+) 369 WP_005489749.1 hypothetical protein -
  NI386_RS08640 (NI386_08615) - 114469..114648 (-) 180 WP_005458791.1 hypothetical protein -
  NI386_RS08645 (NI386_08620) - 115383..116003 (+) 621 WP_005481960.1 lysoplasmalogenase -
  NI386_RS08650 (NI386_08625) - 116073..116294 (+) 222 WP_308390531.1 YecH family metal-binding protein -
  NI386_RS08655 (NI386_08630) - 116414..116998 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  NI386_RS08660 (NI386_08635) - 117052..117318 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  NI386_RS08665 (NI386_08640) rsmD 117344..117943 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NI386_RS08670 (NI386_08645) pilA 118167..119396 (+) 1230 WP_058664673.1 signal recognition particle-docking protein FtsY Machinery gene
  NI386_RS08675 (NI386_08650) ftsE 119419..120093 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  NI386_RS08680 (NI386_08655) ftsX 120083..121051 (+) 969 WP_025506897.1 permease-like cell division protein FtsX -
  NI386_RS08685 (NI386_08660) rpoH 121227..122087 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  NI386_RS08690 (NI386_08665) glpE 122579..122899 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  NI386_RS08695 (NI386_08670) glpG 122899..123741 (+) 843 WP_025547935.1 rhomboid family intramembrane serine protease GlpG -
  NI386_RS08700 (NI386_08675) - 123801..124211 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44541.11 Da        Isoelectric Point: 4.2559

>NTDB_id=603477 NI386_RS08670 WP_058664673.1 118167..119396(+) (pilA) [Vibrio parahaemolyticus strain Isc7]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKII
NNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAA
GDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKID
DSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEF
IDALFSREE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=603477 NI386_RS08670 WP_058664673.1 118167..119396(+) (pilA) [Vibrio parahaemolyticus strain Isc7]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTT
CGCTCGCCTTAAGCGCAGCCTAAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAA
TCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATC
AACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGC
GGAGATTCTATCTAAAGTAGAACAGCCTCTAGATATCGACAGTAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGA
ATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCAGCT
GGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCA
TACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCG
ATACGGCGGGTCGTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGAT
GATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAG
TGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTATCGCTG
ATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTT
ATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(125-186)

SRP54-type protein, GTPase domain (SRP54)

(206-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.176

0.452