Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NI387_RS02465 Genome accession   NZ_CP099921
Coordinates   506624..508618 (+) Length   664 a.a.
NCBI ID   WP_005493886.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501624..513618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS02440 (NI387_02440) rsmE 501776..502507 (-) 732 WP_017449132.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NI387_RS02445 (NI387_02445) endA 502632..503327 (-) 696 WP_308384749.1 deoxyribonuclease I -
  NI387_RS02450 (NI387_02450) - 503447..503944 (-) 498 WP_021453096.1 SprT family zinc-dependent metalloprotease -
  NI387_RS02455 (NI387_02455) - 504011..504808 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NI387_RS02460 (NI387_02460) metK 505153..506307 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  NI387_RS02465 (NI387_02465) recP/tkt 506624..508618 (+) 1995 WP_005493886.1 transketolase Machinery gene
  NI387_RS02470 (NI387_02470) - 508696..509589 (-) 894 WP_005493888.1 LysR family transcriptional regulator -
  NI387_RS02475 (NI387_02475) - 509726..511684 (+) 1959 WP_069505473.1 ligand-gated channel protein -
  NI387_RS02480 (NI387_02480) epd 511815..512852 (+) 1038 WP_005461726.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71997.15 Da        Isoelectric Point: 4.7995

>NTDB_id=603408 NI387_RS02465 WP_005493886.1 506624..508618(+) (recP/tkt) [Vibrio parahaemolyticus strain BM25]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGAYILKDSEGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=603408 NI387_RS02465 WP_005493886.1 506624..508618(+) (recP/tkt) [Vibrio parahaemolyticus strain BM25]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGTTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGATCACTTCACTTACGTGTTCATGGGTGATGGCTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACGCTAGGCCTAGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CAGCAGTAGATGGCCATGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCTGGTTCACACGACTGTCACGGTGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCACGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAACGGCGAACTTCCTGCAGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCAGAAT
TCATGGGCGGCTCTGCTGACCTAGCACCTTCTAACCTAACCATGTGGTCGGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGCGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTTTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAGCAAATGGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGTAGCGCTGAGCAAGTTG
CAGACATCGCGAAAGGTGCTTACATCCTGAAAGACAGTGAAGGTAAGCCTGAGCTAATCCTTATCGCAACAGGCTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAACAACTAACAGCAGAAGGTAAGAAAGTACGCGTGGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTTGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(544-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.554

98.946

0.48