Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6006_RS16155 Genome accession   NZ_CP082898
Coordinates   3405192..3405815 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain KAE3SP     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400192..3410815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6006_RS16140 (K6006_16110) helD 3400427..3402481 (-) 2055 WP_032714177.1 DNA helicase IV -
  K6006_RS16145 (K6006_16115) - 3402605..3403051 (+) 447 WP_020079238.1 YccF domain-containing protein -
  K6006_RS16150 (K6006_16120) yccS 3403069..3405204 (+) 2136 WP_020079239.1 YccS family putative transporter -
  K6006_RS16155 (K6006_16125) sxy/tfoX 3405192..3405815 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  K6006_RS16160 (K6006_16130) sulA 3406265..3406774 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  K6006_RS16165 (K6006_16135) ompA 3407127..3408179 (+) 1053 WP_015704908.1 porin OmpA -
  K6006_RS16170 (K6006_16140) matP 3408271..3408723 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  K6006_RS16175 (K6006_16145) - 3408909..3410666 (+) 1758 WP_196338292.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=603395 K6006_RS16155 WP_026612357.1 3405192..3405815(-) (sxy/tfoX) [Klebsiella aerogenes strain KAE3SP]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=603395 K6006_RS16155 WP_026612357.1 3405192..3405815(-) (sxy/tfoX) [Klebsiella aerogenes strain KAE3SP]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493