Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NI387_RS00510 Genome accession   NZ_CP099921
Coordinates   104704..105927 (+) Length   407 a.a.
NCBI ID   WP_308384738.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99704..110927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS00470 (NI387_00470) - 99998..100327 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  NI387_RS00475 (NI387_00475) - 100569..100937 (+) 369 WP_005489749.1 hypothetical protein -
  NI387_RS00480 (NI387_00480) - 101000..101179 (-) 180 WP_005458791.1 hypothetical protein -
  NI387_RS00485 (NI387_00485) - 101914..102534 (+) 621 WP_005481960.1 lysoplasmalogenase -
  NI387_RS00490 (NI387_00490) - 102604..102825 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  NI387_RS00495 (NI387_00495) - 102952..103536 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  NI387_RS00500 (NI387_00500) - 103589..103855 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  NI387_RS00505 (NI387_00505) rsmD 103881..104480 (-) 600 WP_025611361.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NI387_RS00510 (NI387_00510) pilA 104704..105927 (+) 1224 WP_308384738.1 signal recognition particle-docking protein FtsY Machinery gene
  NI387_RS00515 (NI387_00515) ftsE 105950..106624 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  NI387_RS00520 (NI387_00520) ftsX 106614..107582 (+) 969 WP_005481956.1 permease-like cell division protein FtsX -
  NI387_RS00525 (NI387_00525) rpoH 107758..108618 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  NI387_RS00530 (NI387_00530) glpE 109110..109430 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  NI387_RS00535 (NI387_00535) glpG 109430..110272 (+) 843 WP_025818863.1 rhomboid family intramembrane serine protease GlpG -
  NI387_RS00540 (NI387_00540) - 110332..110742 (-) 411 WP_015297469.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44337.01 Da        Isoelectric Point: 4.2980

>NTDB_id=603392 NI387_RS00510 WP_308384738.1 104704..105927(+) (pilA) [Vibrio parahaemolyticus strain BM25]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVKEEAVEAPSEELQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINN
LTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGD
TFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDS
APHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFID
ALFSREE

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=603392 NI387_RS00510 WP_308384738.1 104704..105927(+) (pilA) [Vibrio parahaemolyticus strain BM25]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAAAAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCTGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCG
CCTTAAACGCAGCCTTAGCCGTACAAAAGCAAACATCGGTGCTGGTTTCTTTGGCCTGTTCAGCGGTAAAAAAATCGATG
ACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGTATGGACACCACCACAAAAATCATCAACAAC
CTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGAT
TCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGAATGGTG
TGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGTAAGAAAGTGATGTTAGCGGCTGGCGAT
ACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGG
CGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGG
CGGGTCGTCTGCAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCT
GCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGT
AGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGT
TTGGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGAC
GCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(123-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.872

92.383

0.442