Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NI388_RS04690 Genome accession   NZ_CP099919
Coordinates   995171..995770 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990171..1000770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS04665 - 991323..991454 (+) 132 WP_005380608.1 hypothetical protein -
  NI388_RS04670 (NI388_04665) - 991527..991874 (+) 348 WP_023585236.1 YbaN family protein -
  NI388_RS04675 (NI388_04670) apt 992040..992585 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  NI388_RS04680 (NI388_04675) dnaX 992594..994729 (+) 2136 WP_308390627.1 DNA polymerase III subunit gamma/tau -
  NI388_RS04685 (NI388_04680) - 994812..995141 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  NI388_RS04690 (NI388_04685) recR 995171..995770 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  NI388_RS04695 (NI388_04690) aqpZ 995821..996519 (-) 699 WP_005460095.1 aquaporin Z -
  NI388_RS04700 (NI388_04695) - 996726..997985 (-) 1260 WP_005494432.1 amino acid permease -
  NI388_RS04705 (NI388_04700) - 998303..998683 (+) 381 WP_005479566.1 RidA family protein -
  NI388_RS04710 (NI388_04705) - 998699..999976 (+) 1278 WP_308390628.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  NI388_RS04715 (NI388_04710) - 1000005..1000664 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=603337 NI388_RS04690 WP_005460088.1 995171..995770(+) (recR) [Vibrio parahaemolyticus strain Isc14B]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=603337 NI388_RS04690 WP_005460088.1 995171..995770(+) (recR) [Vibrio parahaemolyticus strain Isc14B]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432