Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   K8O90_RS01995 Genome accession   NZ_CP082881
Coordinates   123769..124719 (-) Length   316 a.a.
NCBI ID   WP_002872238.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1465     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 113638..138946 123769..124719 within 0


Gene organization within MGE regions


Location: 113638..138946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O90_RS01945 (K8O90_01895) - 113638..115194 (-) 1557 WP_165432715.1 DNA polymerase III subunit gamma/tau -
  K8O90_RS01950 (K8O90_01900) rho 115197..116495 (-) 1299 WP_002780613.1 transcription termination factor Rho -
  K8O90_RS01955 (K8O90_01905) - 116608..118971 (+) 2364 WP_220551587.1 heavy metal translocating P-type ATPase -
  K8O90_RS01960 (K8O90_01910) - 118964..119164 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  K8O90_RS01965 (K8O90_01915) - 119194..119493 (-) 300 WP_002777238.1 cytochrome c -
  K8O90_RS01970 (K8O90_01920) - 119570..120130 (+) 561 WP_321537221.1 HAD family hydrolase -
  K8O90_RS01975 (K8O90_01925) rfaD 120131..121084 (+) 954 WP_223375379.1 ADP-glyceromanno-heptose 6-epimerase -
  K8O90_RS01980 (K8O90_01930) rfaE1 121077..122462 (+) 1386 WP_223375381.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  K8O90_RS01985 (K8O90_01935) gmhA 122459..123019 (+) 561 WP_002787744.1 D-sedoheptulose 7-phosphate isomerase -
  K8O90_RS01990 (K8O90_01940) - 123019..123783 (+) 765 WP_052784973.1 glycosyltransferase family 25 protein -
  K8O90_RS01995 (K8O90_01945) waaF 123769..124719 (-) 951 WP_002872238.1 lipopolysaccharide heptosyltransferase II Regulator
  K8O90_RS02000 (K8O90_01950) - 124778..125587 (+) 810 WP_002825334.1 glycosyltransferase family 2 protein -
  K8O90_RS02005 (K8O90_01955) - 125641..126531 (+) 891 WP_223375383.1 glycosyltransferase -
  K8O90_RS02010 (K8O90_01960) - 126524..127495 (+) 972 WP_139891015.1 glycosyltransferase family 2 protein -
  K8O90_RS02015 (K8O90_01965) - 127573..128781 (+) 1209 WP_223375385.1 glycosyltransferase family 2 protein -
  K8O90_RS02020 (K8O90_01970) - 128774..129640 (+) 867 WP_223375387.1 glycosyltransferase family 2 protein -
  K8O90_RS02025 (K8O90_01975) - 129632..130693 (-) 1062 WP_002899522.1 glycosyltransferase family 4 protein -
  K8O90_RS02030 (K8O90_01980) - 130686..131453 (-) 768 Protein_132 glycosyltransferase family 2 protein -
  K8O90_RS02035 (K8O90_01985) - 131450..132337 (-) 888 WP_223375389.1 lipid A biosynthesis lauroyl acyltransferase -
  K8O90_RS02040 (K8O90_01990) waaC 132330..133358 (-) 1029 WP_002787741.1 lipopolysaccharide heptosyltransferase I -
  K8O90_RS02045 (K8O90_01995) - 133423..134214 (+) 792 WP_025443299.1 3'-5' exonuclease -
  K8O90_RS02050 (K8O90_02000) galE 134271..135257 (+) 987 WP_002777216.1 UDP-glucose 4-epimerase GalE -
  K8O90_RS02055 (K8O90_02005) - 135251..136951 (+) 1701 WP_002786296.1 ABC transporter ATP-binding protein -
  K8O90_RS02060 (K8O90_02010) - 136948..138024 (+) 1077 WP_002787737.1 glycosyltransferase -
  K8O90_RS02065 (K8O90_02015) - 138017..138946 (+) 930 WP_002777213.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36305.91 Da        Isoelectric Point: 10.3316

>NTDB_id=603303 K8O90_RS01995 WP_002872238.1 123769..124719(-) (waaF) [Campylobacter coli strain FDAARGOS_1465]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=603303 K8O90_RS01995 WP_002872238.1 123769..124719(-) (waaF) [Campylobacter coli strain FDAARGOS_1465]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGAATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCACGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.994

99.367

0.924