Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   K8P05_RS07530 Genome accession   NZ_CP082874
Coordinates   1452725..1453171 (+) Length   148 a.a.
NCBI ID   WP_139847602.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447725..1458171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS07510 (K8P05_07440) - 1448677..1450101 (+) 1425 WP_002806692.1 anaerobic C4-dicarboxylate transporter -
  K8P05_RS07515 (K8P05_07445) uvrB 1450136..1452109 (-) 1974 WP_002818800.1 excinuclease ABC subunit UvrB -
  K8P05_RS07520 (K8P05_07450) - 1452263..1452493 (+) 231 WP_002776426.1 hypothetical protein -
  K8P05_RS07525 (K8P05_07455) - 1452483..1452728 (+) 246 WP_002776428.1 hypothetical protein -
  K8P05_RS07530 (K8P05_07460) Cj0683 1452725..1453171 (+) 447 WP_139847602.1 type II secretion system protein Machinery gene
  K8P05_RS07535 (K8P05_07465) - 1453168..1455006 (+) 1839 WP_002787399.1 primosomal protein N' -
  K8P05_RS07540 (K8P05_07470) ispG 1455066..1456139 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  K8P05_RS07545 (K8P05_07475) flgH 1456223..1456921 (-) 699 WP_002776446.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17343.24 Da        Isoelectric Point: 8.4538

>NTDB_id=603299 K8P05_RS07530 WP_139847602.1 1452725..1453171(+) (Cj0683) [Campylobacter coli strain FDAARGOS_1466]
MKKAFTLLELVFVILILGILASLSFSFVNQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQINAFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=603299 K8P05_RS07530 WP_139847602.1 1452725..1453171(+) (Cj0683) [Campylobacter coli strain FDAARGOS_1466]
ATGAAAAAGGCTTTTACTCTTTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTAGCAAGTTTAAGCTTCTCTTT
TGTCAATCAAAATAAAAATGATGCAAAATTGTTAAAATTAAAAATAGATTATGAAATGCTAAATTCAGCCCTGTCTCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAATGCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.784

100

0.588