Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   K8P05_RS02770 Genome accession   NZ_CP082874
Coordinates   545856..546167 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 540856..551167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS02750 (K8P05_02720) ctsE 541723..543285 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  K8P05_RS02755 (K8P05_02725) - 543278..543874 (-) 597 WP_002779313.1 CDC27 family protein -
  K8P05_RS02760 (K8P05_02730) ctsP 543871..544467 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  K8P05_RS02765 (K8P05_02735) ctsD 544460..545878 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  K8P05_RS02770 (K8P05_02740) ctsR 545856..546167 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  K8P05_RS02775 (K8P05_02745) nifJ 546191..549751 (-) 3561 WP_004295563.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  K8P05_RS02780 (K8P05_02750) - 549855..550493 (-) 639 WP_002781164.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=603292 K8P05_RS02770 WP_002779316.1 545856..546167(-) (ctsR) [Campylobacter coli strain FDAARGOS_1466]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=603292 K8P05_RS02770 WP_002779316.1 545856..546167(-) (ctsR) [Campylobacter coli strain FDAARGOS_1466]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553