Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K8P05_RS02185 Genome accession   NZ_CP082874
Coordinates   423371..424339 (+) Length   322 a.a.
NCBI ID   WP_002821864.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418371..429339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS02160 (K8P05_02130) - 419227..419952 (-) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  K8P05_RS02165 (K8P05_02135) - 419961..420299 (-) 339 WP_002777761.1 hypothetical protein -
  K8P05_RS02170 (K8P05_02140) - 420301..421608 (-) 1308 WP_002834211.1 NFACT family protein -
  K8P05_RS02175 (K8P05_02145) - 421671..422246 (+) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  K8P05_RS02180 (K8P05_02150) - 422345..423238 (+) 894 WP_234888482.1 phospholipase A -
  K8P05_RS02185 (K8P05_02155) ceuB 423371..424339 (+) 969 WP_002821864.1 ABC transporter permease Machinery gene
  K8P05_RS02190 (K8P05_02160) - 424332..425270 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  K8P05_RS02195 (K8P05_02165) - 425267..426022 (+) 756 WP_002785724.1 ABC transporter ATP-binding protein -
  K8P05_RS02200 (K8P05_02170) - 426051..426866 (+) 816 Protein_431 siderophore ABC transporter substrate-binding protein -
  K8P05_RS02205 (K8P05_02175) - 427032..427664 (+) 633 WP_002810397.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35565.41 Da        Isoelectric Point: 9.5069

>NTDB_id=603285 K8P05_RS02185 WP_002821864.1 423371..424339(+) (ceuB) [Campylobacter coli strain FDAARGOS_1466]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLIAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=603285 K8P05_RS02185 WP_002821864.1 423371..424339(+) (ceuB) [Campylobacter coli strain FDAARGOS_1466]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTGCTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTATTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891