Detailed information NTG0603279

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: K8P05_RS01050
• Genome accession: NZ_CP082874
• Coordinates: 206159..207103 (+)
• Length: 314 a.a.
• NCBI ID: WP_223416945.1
• Uniprot ID: -
• Organism: Campylobacter coli strain FDAARGOS_1466
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 201159..212103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K8P05_RS01030 (K8P05_01025)	-	201798..202736 (-)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-
K8P05_RS01035 (K8P05_01030)	gmd	202729..203868 (-)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
K8P05_RS01040 (K8P05_01035)	-	203869..205236 (-)	1368	Protein_204	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K8P05_RS01045 (K8P05_01040)	-	205279..206100 (-)	822	WP_215460502.1	glycosyltransferase family 2 protein	-
K8P05_RS01050 (K8P05_01045)	waaF	206159..207103 (+)	945	WP_223416945.1	lipopolysaccharide heptosyltransferase II	Regulator
K8P05_RS01055 (K8P05_01050)	-	207096..207860 (-)	765	WP_052777778.1	glycosyltransferase family 25 protein	-
K8P05_RS01060 (K8P05_01055)	gmhA	207860..208420 (-)	561	WP_052777779.1	D-sedoheptulose 7-phosphate isomerase	-
K8P05_RS01065 (K8P05_01060)	rfaE1	208417..209802 (-)	1386	WP_057038904.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
K8P05_RS01070 (K8P05_01065)	rfaD	209795..210748 (-)	954	WP_072238544.1	ADP-glyceromanno-heptose 6-epimerase	-
K8P05_RS01075 (K8P05_01070)	-	210749..211308 (-)	560	Protein_211	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
K8P05_RS01080 (K8P05_01075)	-	211385..211684 (+)	300	WP_052781365.1	cytochrome c	-
K8P05_RS01085 (K8P05_01080)	-	211714..211914 (-)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36079.65 Da
• Isoelectric Point: 10.2782

>NTDB_id=603279 K8P05_RS01050 WP_223416945.1 206159..207103(+) (waaF) [Campylobacter coli strain FDAARGOS_1466]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKAKQRYFFNKYDFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide

• Length: 945 bp

>NTDB_id=603279 K8P05_RS01050 WP_223416945.1 206159..207103(+) (waaF) [Campylobacter coli strain FDAARGOS_1466]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCTTCCAAGATCATTTTACACATCCTTAAGGCAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGACATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (105-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	82.748	99.682	0.825