Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K8P06_RS18735 Genome accession   NZ_CP082868
Coordinates   4006493..4007320 (+) Length   275 a.a.
NCBI ID   WP_330367607.1    Uniprot ID   -
Organism   Clostridioides difficile strain FDAARGOS_1469     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4001493..4012320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P06_RS18715 (K8P06_18560) - 4002144..4002935 (+) 792 WP_003420287.1 HAD family hydrolase -
  K8P06_RS18720 (K8P06_18565) - 4003050..4003604 (-) 555 WP_003420290.1 cupin domain-containing protein -
  K8P06_RS18725 (K8P06_18570) - 4003798..4005000 (+) 1203 WP_009905536.1 DUF819 domain-containing protein -
  K8P06_RS18730 (K8P06_18575) - 4005057..4006037 (+) 981 WP_003420295.1 dipeptidase -
  K8P06_RS19405 - 4006299..4006493 (+) 195 WP_330367606.1 hypothetical protein -
  K8P06_RS18735 (K8P06_18580) ceuB 4006493..4007320 (+) 828 WP_330367607.1 ABC transporter permease Machinery gene
  K8P06_RS18740 (K8P06_18585) - 4007310..4008266 (+) 957 WP_003420299.1 iron chelate uptake ABC transporter family permease subunit -
  K8P06_RS18745 (K8P06_18590) - 4008263..4009018 (+) 756 WP_003420301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30135.47 Da        Isoelectric Point: 9.5616

>NTDB_id=603252 K8P06_RS18735 WP_330367607.1 4006493..4007320(+) (ceuB) [Clostridioides difficile strain FDAARGOS_1469]
MSRVPRLISILIAGVGMSIAGLIMQQISKNKFVSPTTGATIDAAQFGIVICMLLVPTASIFTKTIIAFVFSLVGTFMFMK
IIGKLQFKNIIFVPLVGIMFGNIIGSMTDFIAYKYDLSQNVSSWMQGDFSMILKGNYEILYITIPLIILAYIYANKFTVV
GMGMDFATNLGLSYKRIVNIGLIIVALVTVCVVVTAGNIPFIGLIVPNIVSLYMGDNIRASIWYTGLLGAIFVLICDIFG
RIIIYPYEISIGLTVGVIGSILFLYLILRRNVNEA

Nucleotide


Download         Length: 828 bp        

>NTDB_id=603252 K8P06_RS18735 WP_330367607.1 4006493..4007320(+) (ceuB) [Clostridioides difficile strain FDAARGOS_1469]
ATGAGTAGAGTACCAAGATTAATAAGTATATTGATTGCTGGTGTAGGAATGAGCATAGCAGGTCTTATAATGCAACAGAT
AAGTAAAAATAAATTTGTATCACCTACAACAGGAGCTACAATAGACGCAGCTCAATTTGGGATAGTGATATGTATGCTTT
TAGTACCAACTGCCTCTATTTTTACAAAGACAATAATAGCATTTGTATTTTCTCTTGTAGGGACTTTTATGTTTATGAAA
ATAATAGGTAAGTTACAATTTAAAAATATAATCTTTGTACCATTAGTAGGTATAATGTTTGGAAATATAATAGGTTCTAT
GACAGATTTTATAGCATATAAATACGATTTGAGTCAAAATGTTAGCTCTTGGATGCAGGGTGACTTTTCTATGATACTTA
AAGGAAATTATGAGATATTATATATAACAATACCCCTTATAATACTAGCATATATTTATGCAAACAAATTTACTGTTGTT
GGTATGGGTATGGATTTTGCAACAAACTTAGGTCTTAGTTACAAAAGAATTGTCAATATAGGTCTGATAATAGTAGCACT
TGTTACAGTATGTGTAGTTGTTACAGCTGGTAATATACCTTTTATAGGTCTAATAGTTCCAAATATCGTATCCTTATATA
TGGGCGATAATATAAGAGCAAGTATATGGTATACAGGTTTACTTGGAGCTATATTTGTACTTATATGTGATATTTTTGGA
AGAATTATTATTTATCCATATGAAATATCTATAGGACTTACAGTTGGAGTTATAGGAAGTATACTATTCCTTTATTTAAT
ATTAAGGAGGAATGTAAATGAAGCTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(2-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.661

98.545

0.509