Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NIY04_RS10680 Genome accession   NZ_CP099856
Coordinates   2208569..2209204 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 17978S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2203569..2214204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS10655 (NIY04_10655) - 2203625..2204605 (-) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  NIY04_RS10660 (NIY04_10660) kdsB 2204617..2205378 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NIY04_RS10665 (NIY04_10665) lpxK 2205388..2206398 (-) 1011 WP_000050458.1 tetraacyldisaccharide 4'-kinase -
  NIY04_RS10670 (NIY04_10670) msbA 2206401..2208128 (-) 1728 WP_001070732.1 lipid A export permease/ATP-binding protein MsbA -
  NIY04_RS10675 (NIY04_10675) - 2208125..2208553 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  NIY04_RS10680 (NIY04_10680) exbB 2208569..2209204 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NIY04_RS10685 (NIY04_10685) - 2209254..2210141 (-) 888 WP_000023426.1 ParB/RepB/Spo0J family partition protein -
  NIY04_RS10690 (NIY04_10690) - 2210138..2210920 (-) 783 WP_000057212.1 ParA family protein -
  NIY04_RS10695 (NIY04_10695) rsmG 2210942..2211574 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NIY04_RS10700 (NIY04_10700) murU 2211662..2212351 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NIY04_RS10705 (NIY04_10705) - 2212351..2213364 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=603121 NIY04_RS10680 WP_000264037.1 2208569..2209204(-) (exbB) [Acinetobacter baumannii strain 17978S]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=603121 NIY04_RS10680 WP_000264037.1 2208569..2209204(-) (exbB) [Acinetobacter baumannii strain 17978S]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393