Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   K8O83_RS01210 Genome accession   NZ_CP082857
Coordinates   195911..196207 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus aegyptius strain FDAARGOS_1478     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190911..201207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O83_RS01200 (K8O83_01170) - 192281..195298 (+) 3018 WP_126441172.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K8O83_RS01205 (K8O83_01175) - 195559..195918 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  K8O83_RS01210 (K8O83_01180) HI0659 195911..196207 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  K8O83_RS01215 (K8O83_01185) - 196368..198284 (+) 1917 WP_006995317.1 ABC transporter ATP-binding protein -
  K8O83_RS01220 (K8O83_01190) - 198294..198830 (+) 537 WP_006995316.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K8O83_RS01225 (K8O83_01195) - 198846..199397 (+) 552 WP_006995315.1 Sua5/YciO/YrdC/YwlC family protein -
  K8O83_RS01230 (K8O83_01200) aroE 199401..200207 (+) 807 WP_006995314.1 shikimate dehydrogenase -
  K8O83_RS01235 (K8O83_01205) - 200219..200971 (+) 753 WP_006995313.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=603105 K8O83_RS01210 WP_005650837.1 195911..196207(+) (HI0659) [Haemophilus aegyptius strain FDAARGOS_1478]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=603105 K8O83_RS01210 WP_005650837.1 195911..196207(+) (HI0659) [Haemophilus aegyptius strain FDAARGOS_1478]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCTCGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTTCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1