Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NIY03_RS10780 Genome accession   NZ_CP099855
Coordinates   2232941..2234929 (-) Length   662 a.a.
NCBI ID   WP_000211068.1    Uniprot ID   V5XVR9
Organism   Acinetobacter baumannii strain 17978R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2227941..2239929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS10750 (NIY03_10750) trmA 2228504..2229589 (+) 1086 WP_000204683.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  NIY03_RS10755 (NIY03_10755) - 2229838..2230068 (+) 231 WP_000011679.1 hypothetical protein -
  NIY03_RS10760 (NIY03_10760) - 2230104..2230850 (-) 747 WP_000699307.1 phosphodiester glycosidase family protein -
  NIY03_RS10765 (NIY03_10765) - 2231037..2231627 (+) 591 WP_001187976.1 lecithin retinol acyltransferase family protein -
  NIY03_RS10770 (NIY03_10770) - 2231673..2232263 (-) 591 WP_000550328.1 YceI family protein -
  NIY03_RS10775 (NIY03_10775) - 2232479..2232886 (+) 408 WP_000248287.1 OsmC family protein -
  NIY03_RS10780 (NIY03_10780) recP/tkt 2232941..2234929 (-) 1989 WP_000211068.1 transketolase Machinery gene
  NIY03_RS10785 (NIY03_10785) metK 2235454..2236620 (+) 1167 WP_001209544.1 methionine adenosyltransferase -
  NIY03_RS10790 (NIY03_10790) - 2236744..2236992 (-) 249 WP_000966850.1 hypothetical protein -
  NIY03_RS10795 (NIY03_10795) - 2237251..2237436 (+) 186 WP_000192624.1 hypothetical protein -
  NIY03_RS10800 (NIY03_10800) - 2237499..2238059 (-) 561 WP_001050729.1 FxsA family protein -
  NIY03_RS10805 (NIY03_10805) - 2238458..2239282 (+) 825 WP_001021784.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-259 -
  NIY03_RS10810 (NIY03_10810) - 2239354..2239899 (-) 546 WP_001109738.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72258.67 Da        Isoelectric Point: 4.9694

>NTDB_id=603047 NIY03_RS10780 WP_000211068.1 2232941..2234929(-) (recP/tkt) [Acinetobacter baumannii strain 17978R]
MTTPLNERRIANAIRVLAMDAVQQANSGHPGAPMGMADIADVVWREFLNHNPNNPQWANRDRFVLSNGHGSMLQYALLHL
TGYDLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGIANAVGFALAEKTLAAQFNKDDLKVVDHFTYCFLGDGC
LMEGISHEVCSLAGTLQLGKLIAYYDDNGISIDGEVEGWFSDDTEERFKSYGWQVLRVDGHDADAIRQATVEAKAETQKP
TIIICKTIIGLGSPNKQGKEDCHGAPLGKDEITLTREALGWTEEAFVIPADVYAAWDAKAKGNEAEAAWNEVFAQYQAKY
PTEAAELLRRISGDLPAEFSAQADAFIRETNAKAETVATRKASQNTLQAFGPLLPELLGGSADLAGSNLTLWKGCQGVQE
NPAGNYVYYGVREFGMTAIANGVALHGGFIPYVATFLMFMEYARNAVRMSALMKQRVIHVYTHDSIGLGEDGPTHQPIEQ
IASLRGTPNLNTWRPADTVETAIAWKSALERKDGPTALIFSRQNLPFQTRTEEQIQNAAKGGYVLAQEKGELKAIIIATG
SEVSLAMEAYAQLEGVRVVSMPCAEEFMKQDAAYREAVLPAHIRARVAVEAAHVDYWWKFVGLDGKVIGMTTYGESAPAK
DLFQFFGITTEAVVAAVKELTA

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=603047 NIY03_RS10780 WP_000211068.1 2232941..2234929(-) (recP/tkt) [Acinetobacter baumannii strain 17978R]
ATGACGACCCCTTTAAACGAACGTCGTATTGCAAACGCAATTCGTGTATTGGCAATGGATGCTGTGCAACAGGCAAACTC
AGGGCATCCGGGTGCTCCAATGGGGATGGCAGATATTGCTGATGTCGTCTGGCGCGAGTTTTTAAATCACAACCCAAATA
ATCCACAATGGGCAAACCGTGACCGTTTTGTTTTATCAAATGGCCATGGTTCAATGTTGCAATATGCTTTGCTTCATTTA
ACAGGTTATGATCTTTCAATTGAAGATTTAAAACAATTCCGTCAATTGCACTCAAAAACTCCTGGTCACCCTGAATATGG
TTATGCTCCAGGAATTGAAACAACGACAGGTCCTTTGGGTCAAGGTATTGCAAACGCTGTTGGTTTTGCATTAGCAGAAA
AAACTTTAGCTGCTCAGTTCAATAAAGATGACTTAAAAGTAGTTGATCACTTTACCTATTGTTTCTTAGGTGATGGCTGT
TTAATGGAAGGTATTTCTCATGAAGTATGTTCTTTAGCAGGTACTTTACAGCTTGGTAAATTGATTGCTTATTATGATGA
CAACGGCATTTCGATTGATGGTGAAGTAGAAGGCTGGTTCAGTGATGACACTGAAGAGCGTTTCAAGTCTTATGGTTGGC
AAGTTCTTCGTGTAGATGGCCACGATGCTGATGCGATTCGTCAAGCAACAGTTGAAGCTAAAGCAGAAACTCAAAAACCA
ACGATTATTATTTGTAAAACAATTATTGGCTTAGGTTCTCCAAACAAACAAGGTAAAGAAGACTGTCACGGTGCACCACT
GGGTAAAGATGAAATTACCTTAACTCGTGAAGCTTTAGGTTGGACTGAAGAAGCATTTGTTATTCCTGCTGATGTATATG
CTGCATGGGATGCTAAAGCAAAAGGTAATGAAGCTGAAGCAGCTTGGAATGAAGTATTTGCTCAATACCAAGCAAAATAT
CCAACGGAAGCGGCTGAGTTACTTCGTCGTATTAGCGGTGACTTACCAGCAGAATTTTCAGCTCAAGCAGATGCATTTAT
TCGTGAAACAAATGCTAAAGCTGAGACTGTAGCAACTCGTAAAGCGAGCCAAAACACATTACAAGCATTTGGTCCTTTAT
TACCTGAATTATTAGGTGGTTCTGCGGACTTGGCAGGTTCTAACTTAACACTTTGGAAAGGTTGCCAAGGCGTTCAAGAA
AACCCGGCTGGTAACTACGTATATTATGGTGTACGTGAGTTCGGTATGACTGCAATCGCTAACGGTGTTGCATTGCATGG
CGGCTTCATTCCTTACGTTGCAACGTTCTTAATGTTTATGGAATATGCACGTAATGCGGTACGTATGTCTGCATTAATGA
AACAGCGCGTGATTCATGTGTACACACATGACTCAATCGGTTTAGGTGAAGATGGTCCAACACACCAACCAATTGAACAA
ATTGCTTCTTTACGTGGCACACCAAACTTAAATACTTGGCGTCCTGCTGATACTGTAGAAACAGCAATTGCGTGGAAATC
TGCTTTAGAGCGTAAAGATGGCCCTACAGCACTTATTTTCTCTCGTCAAAACTTACCATTCCAAACGCGTACTGAAGAGC
AAATCCAAAATGCGGCAAAAGGTGGTTATGTTCTTGCTCAAGAGAAAGGTGAGTTGAAAGCAATTATTATTGCTACTGGT
TCAGAAGTTTCTTTAGCAATGGAAGCTTATGCTCAACTTGAAGGTGTTCGTGTTGTTTCTATGCCATGTGCAGAAGAGTT
CATGAAACAAGATGCTGCATATCGTGAAGCAGTATTACCAGCTCACATTCGTGCACGTGTTGCTGTAGAAGCTGCTCATG
TTGACTACTGGTGGAAGTTTGTTGGTCTTGATGGCAAAGTAATTGGTATGACAACTTATGGTGAGTCAGCACCAGCAAAA
GACTTGTTCCAATTCTTCGGTATTACAACTGAGGCTGTAGTTGCTGCGGTAAAAGAGTTAACTGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-653)

Transketolase, pyrimidine binding domain (Transket_pyr)

(356-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5XVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

99.547

0.473