Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   K8O89_RS08515 Genome accession   NZ_CP082852
Coordinates   1882267..1882953 (-) Length   228 a.a.
NCBI ID   WP_019232511.1    Uniprot ID   A0AAX0WSQ0
Organism   Legionella anisa strain FDAARGOS_1480     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877267..1887953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS08495 (K8O89_08480) - 1878292..1879482 (+) 1191 WP_019232508.1 phosphoglycerate kinase -
  K8O89_RS08500 (K8O89_08485) pyk 1879466..1880884 (+) 1419 WP_019232509.1 pyruvate kinase -
  K8O89_RS08510 (K8O89_08495) - 1881476..1881816 (-) 341 Protein_1676 endonuclease domain-containing protein -
  K8O89_RS08515 (K8O89_08500) rocC 1882267..1882953 (-) 687 WP_019232511.1 ProQ/FINO family protein Regulator
  K8O89_RS08520 (K8O89_08505) - 1883223..1883414 (+) 192 WP_019232512.1 hypothetical protein -
  K8O89_RS08525 (K8O89_08510) dapB 1883436..1884167 (+) 732 WP_019232513.1 4-hydroxy-tetrahydrodipicolinate reductase -
  K8O89_RS08530 (K8O89_08515) - 1884394..1886850 (-) 2457 WP_019232515.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25705.52 Da        Isoelectric Point: 10.4297

>NTDB_id=603046 K8O89_RS08515 WP_019232511.1 1882267..1882953(-) (rocC) [Legionella anisa strain FDAARGOS_1480]
MRRQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIQPLKVGIMDDILLYADKAEEVGISKSKLREAVVL
FTRRLDYLACLKLREMRVDLHGNEVGAVSEEEAEHAAVKIKKRVEKSVRNARKVQTEKTPTQSNSNQQSSSFQAKIMSQA
PTTGEDHFPTYPARSPMYNTLNAPVQPAKTTAVVVKHKTAKQYDPDVVARLKEKLGLSRNEKKEETIE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=603046 K8O89_RS08515 WP_019232511.1 1882267..1882953(-) (rocC) [Legionella anisa strain FDAARGOS_1480]
ATGAGAAGACAAGAGCTGCACCCACGCACTGCCGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCGCGAACAGA
CGCCTTATTGTGGCTCGCTGCAAATTTTCCTGCGGCATTTGATAATTCGTTACGAATCCAGCCGTTAAAAGTGGGAATTA
TGGATGATATTTTGCTTTATGCAGATAAGGCAGAAGAAGTAGGTATTTCCAAAAGTAAATTAAGAGAAGCAGTGGTTTTA
TTTACGCGTCGACTTGATTATTTGGCATGCCTTAAGCTACGAGAAATGCGTGTTGATTTGCATGGTAACGAAGTCGGTGC
AGTGAGTGAAGAAGAGGCAGAACATGCAGCAGTCAAGATTAAAAAGCGGGTTGAAAAAAGTGTAAGAAATGCGCGTAAGG
TTCAGACAGAAAAAACGCCAACTCAATCCAATTCAAATCAGCAAAGCTCCAGTTTTCAAGCGAAAATAATGAGTCAAGCA
CCCACGACTGGAGAGGATCATTTTCCTACTTATCCAGCGCGCTCCCCAATGTATAATACTTTAAATGCACCCGTTCAACC
TGCTAAGACAACGGCTGTAGTTGTGAAGCATAAGACTGCAAAACAATATGATCCCGATGTTGTAGCACGTTTGAAAGAGA
AACTGGGGCTGTCTCGAAATGAGAAAAAAGAAGAAACTATCGAATAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

67.391

100

0.68