Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   K8O86_RS17525 Genome accession   NZ_CP082850
Coordinates   4000878..4001297 (+) Length   139 a.a.
NCBI ID   WP_003635608.1    Uniprot ID   D3HKN8
Organism   Legionella longbeachae strain FDAARGOS_1481     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3995878..4006297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O86_RS17515 (K8O86_17455) - 3996804..3997373 (+) 570 WP_012979330.1 pilus assembly protein -
  K8O86_RS17520 (K8O86_17460) - 3997386..4000865 (+) 3480 WP_003635609.1 pilus assembly protein -
  K8O86_RS17525 (K8O86_17465) pilE 4000878..4001297 (+) 420 WP_003635608.1 type IV pilin protein Machinery gene
  K8O86_RS17530 (K8O86_17470) - 4001584..4002222 (-) 639 WP_003635606.1 hypothetical protein -
  K8O86_RS17535 (K8O86_17475) - 4002464..4003489 (-) 1026 WP_003635604.1 PotD/PotF family extracellular solute-binding protein -
  K8O86_RS17540 (K8O86_17480) - 4003486..4004253 (-) 768 WP_003635601.1 ABC transporter permease subunit -
  K8O86_RS17545 (K8O86_17485) - 4004250..4005074 (-) 825 WP_003635599.1 ABC transporter permease -
  K8O86_RS17550 (K8O86_17490) potA 4005064..4006158 (-) 1095 WP_003635598.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15313.53 Da        Isoelectric Point: 7.5805

>NTDB_id=603032 K8O86_RS17525 WP_003635608.1 4000878..4001297(+) (pilE) [Legionella longbeachae strain FDAARGOS_1481]
MKQPRINGFTLIDLMIALVVMAILVTIAYPYYVGFLLKTRRSDALATLAQDQIYLERCYAQNFSYNTCTSLPAFPQISAQ
GFYSITLSNLGPTTYTLTATPRGSQTEDTTCARMTVDQANVKTAVDSSGTTQTICWNPS

Nucleotide


Download         Length: 420 bp        

>NTDB_id=603032 K8O86_RS17525 WP_003635608.1 4000878..4001297(+) (pilE) [Legionella longbeachae strain FDAARGOS_1481]
ATGAAACAACCTCGAATAAATGGTTTTACCTTAATTGATTTAATGATAGCTTTAGTGGTTATGGCGATACTGGTGACTAT
TGCCTATCCCTATTACGTGGGTTTTTTGCTAAAAACACGACGTTCTGATGCTTTGGCCACACTAGCCCAAGATCAAATCT
ATCTTGAACGCTGCTATGCACAAAATTTTTCTTATAATACATGCACATCCTTACCCGCATTTCCGCAAATATCGGCGCAA
GGATTCTACAGCATCACCCTAAGTAATCTTGGGCCGACAACATATACCCTCACGGCAACACCGCGAGGAAGCCAGACCGA
AGATACGACATGTGCACGTATGACAGTGGATCAAGCCAACGTAAAAACCGCGGTAGATTCCTCAGGAACTACGCAAACTA
TTTGTTGGAATCCTTCATGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3HKN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

59.574

100

0.604
  pilE Legionella pneumophila strain ERS1305867

59.574

100

0.604