Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NIY03_RS05670 Genome accession   NZ_CP099855
Coordinates   1202574..1203515 (+) Length   313 a.a.
NCBI ID   WP_001210789.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197574..1208515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS05660 (NIY03_05660) basA 1197997..1199844 (+) 1848 WP_000910250.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  NIY03_RS05665 (NIY03_05665) basB 1199915..1201942 (-) 2028 WP_000939843.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  NIY03_RS18640 - 1202443..1202574 (+) 132 WP_001218004.1 hypothetical protein -
  NIY03_RS05670 (NIY03_05670) ceuB 1202574..1203515 (+) 942 WP_001210789.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  NIY03_RS05675 (NIY03_05675) bauC 1203515..1204462 (+) 948 WP_001223277.1 ferric acinetobactin ABC transporter permease subunit BauC -
  NIY03_RS05680 (NIY03_05680) bauE 1204459..1205229 (+) 771 WP_000582115.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  NIY03_RS05685 (NIY03_05685) bauB 1205236..1206204 (+) 969 WP_001104125.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33979.03 Da        Isoelectric Point: 8.6941

>NTDB_id=603032 NIY03_RS05670 WP_001210789.1 1202574..1203515(+) (ceuB) [Acinetobacter baumannii strain 17978R]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVALTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=603032 NIY03_RS05670 WP_001210789.1 1202574..1203515(+) (ceuB) [Acinetobacter baumannii strain 17978R]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCATTATTGCTCGGGGCTGAACAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGTCGTATTCCTCGTTTAATTACCATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGTGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGGCGGATCCGTTTTAGAAATACGGTTTTAG
TACCAGTTATTGGTTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGCCCTGACTTATCTTTTCGCACACCGCTTTACCGTAATTGGTATGGGGGAAGAGATGGCTTCTAGTTTGGGACTCA
GTTATGCAGCTATAGCCGCCATTGGTTTGATACTGGTTGCCATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCGATTGTGGC
TTTGGGTGGGGCATCTCTATTACTGATTTGTGACATTCTTGGCCGCTCAATCATTTACCCATTTGAAGTGCCGATCGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419