Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J71_RS03880 Genome accession   NZ_AP018783
Coordinates   765291..765905 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-3 isolate 15H03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760291..770905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J71_RS03855 (CHBNV3_07390) - 760859..761377 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J71_RS03860 (CHBNV3_07400) aspS 761596..763362 (+) 1767 WP_005649039.1 aspartate--tRNA ligase -
  K6J71_RS03865 (CHBNV3_07410) nudB 763384..763857 (+) 474 WP_005666660.1 dihydroneopterin triphosphate diphosphatase -
  K6J71_RS03870 (CHBNV3_07420) - 763869..764609 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J71_RS03875 (CHBNV3_07430) ruvC 764656..765228 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  K6J71_RS03880 (CHBNV3_07440) ruvA 765291..765905 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J71_RS03885 (CHBNV3_07450) ruvB 765913..766920 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J71_RS03890 (CHBNV3_07460) - 766972..767259 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  K6J71_RS03895 (CHBNV3_07470) xerD 767432..768325 (-) 894 WP_005666666.1 site-specific tyrosine recombinase XerD -
  K6J71_RS03900 (CHBNV3_07480) - 768356..769522 (-) 1167 WP_005666667.1 3-phenylpropionate MFS transporter -
  K6J71_RS03905 (CHBNV3_07490) proC 769522..770337 (-) 816 WP_005649013.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=60300 K6J71_RS03880 WP_005659994.1 765291..765905(+) (ruvA) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=60300 K6J71_RS03880 WP_005659994.1 765291..765905(+) (ruvA) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment