Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   K8O97_RS12185 Genome accession   NZ_CP082848
Coordinates   2714143..2714457 (-) Length   104 a.a.
NCBI ID   WP_027224483.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2709143..2719457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS12160 (K8O97_12130) - 2709569..2710069 (-) 501 WP_014844283.1 hypothetical protein -
  K8O97_RS12165 (K8O97_12135) - 2710561..2711421 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  K8O97_RS12170 (K8O97_12140) - 2711538..2712734 (-) 1197 WP_027224485.1 murein transglycosylase A -
  K8O97_RS12175 (K8O97_12145) lpp1976 2712844..2713401 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  K8O97_RS12180 (K8O97_12150) lpp1977 2713398..2714204 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  K8O97_RS12185 (K8O97_12155) lpp1978 2714143..2714457 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K8O97_RS12190 (K8O97_12160) hisC 2714617..2715726 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  K8O97_RS12195 (K8O97_12165) - 2715763..2716104 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  K8O97_RS12200 (K8O97_12170) secF 2716293..2717210 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  K8O97_RS12205 (K8O97_12175) secD 2717223..2719079 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  K8O97_RS12210 (K8O97_12180) yajC 2719101..2719436 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=602991 K8O97_RS12185 WP_027224483.1 2714143..2714457(-) (lpp1978) [Legionella pneumophila strain FDAARGOS_1482]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=602991 K8O97_RS12185 WP_027224483.1 2714143..2714457(-) (lpp1978) [Legionella pneumophila strain FDAARGOS_1482]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971