Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K8O97_RS06920 Genome accession   NZ_CP082848
Coordinates   1519520..1520104 (+) Length   194 a.a.
NCBI ID   WP_014843601.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514520..1525104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS06900 (K8O97_06890) - 1515873..1516880 (-) 1008 WP_014843598.1 hypothetical protein -
  K8O97_RS06905 (K8O97_06895) pilM 1517297..1518361 (+) 1065 WP_014843599.1 type IV pilus assembly protein PilM Machinery gene
  K8O97_RS06910 (K8O97_06900) pilN 1518365..1518913 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  K8O97_RS06915 (K8O97_06905) pilO 1518927..1519523 (+) 597 WP_027224065.1 type 4a pilus biogenesis protein PilO Machinery gene
  K8O97_RS06920 (K8O97_06910) pilP 1519520..1520104 (+) 585 WP_014843601.1 pilus assembly protein PilP Machinery gene
  K8O97_RS06925 (K8O97_06915) pilQ 1520108..1522204 (+) 2097 WP_014843602.1 type IV pilus secretin PilQ Machinery gene
  K8O97_RS06930 (K8O97_06920) aroK 1522649..1523176 (+) 528 WP_010946667.1 shikimate kinase AroK -
  K8O97_RS06935 (K8O97_06925) aroB 1523163..1524272 (+) 1110 WP_013101269.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22158.69 Da        Isoelectric Point: 10.0634

>NTDB_id=602972 K8O97_RS06920 WP_014843601.1 1519520..1520104(+) (pilP) [Legionella pneumophila strain FDAARGOS_1482]
MIIKNNQTLILGFFGNSLCTLLTSENFRKSLLTALLVLLLSACSGDNSDLIKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDDRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=602972 K8O97_RS06920 WP_014843601.1 1519520..1520104(+) (pilP) [Legionella pneumophila strain FDAARGOS_1482]
ATGATAATTAAAAATAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGTGCACTTTACTCACCTCAGAGAATTT
CCGAAAAAGTCTATTGACGGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTATTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGGAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGGTTTCCA
GAAAACGACGATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAGCAACCTGACGGCCAGATTAGCCGTGTTAGGGTTGGAGATTATATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

98.454

100

0.985