Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K8O97_RS06915 Genome accession   NZ_CP082848
Coordinates   1518927..1519523 (+) Length   198 a.a.
NCBI ID   WP_027224065.1    Uniprot ID   A0AAP3HB18
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513927..1524523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS06900 (K8O97_06890) - 1515873..1516880 (-) 1008 WP_014843598.1 hypothetical protein -
  K8O97_RS06905 (K8O97_06895) pilM 1517297..1518361 (+) 1065 WP_014843599.1 type IV pilus assembly protein PilM Machinery gene
  K8O97_RS06910 (K8O97_06900) pilN 1518365..1518913 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  K8O97_RS06915 (K8O97_06905) pilO 1518927..1519523 (+) 597 WP_027224065.1 type 4a pilus biogenesis protein PilO Machinery gene
  K8O97_RS06920 (K8O97_06910) pilP 1519520..1520104 (+) 585 WP_014843601.1 pilus assembly protein PilP Machinery gene
  K8O97_RS06925 (K8O97_06915) pilQ 1520108..1522204 (+) 2097 WP_014843602.1 type IV pilus secretin PilQ Machinery gene
  K8O97_RS06930 (K8O97_06920) aroK 1522649..1523176 (+) 528 WP_010946667.1 shikimate kinase AroK -
  K8O97_RS06935 (K8O97_06925) aroB 1523163..1524272 (+) 1110 WP_013101269.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22436.16 Da        Isoelectric Point: 5.3369

>NTDB_id=602971 K8O97_RS06915 WP_027224065.1 1518927..1519523(+) (pilO) [Legionella pneumophila strain FDAARGOS_1482]
MDTVNLNELTLENVGQWPMPVKIGVILGISILIIGLGYWLIVKPNFEQLEIQEAQEIALKTEFEKKQHQAANLQAYRNQL
QLMNERFGTMLKQLPAKNEMPGLLEEISKTGIASGLKFELFAPQPEVVHDFYVELPIKITIVGSYMQLARFLSRVAEMNR
IVTLHEFSVEGVSGDGKTVSQDELVMAITAKIYRYRAQ

Nucleotide


Download         Length: 597 bp        

>NTDB_id=602971 K8O97_RS06915 WP_027224065.1 1518927..1519523(+) (pilO) [Legionella pneumophila strain FDAARGOS_1482]
ATGGACACGGTCAATTTAAATGAATTAACTCTAGAGAATGTTGGGCAGTGGCCAATGCCGGTTAAAATCGGAGTAATTTT
AGGCATCAGTATACTGATAATTGGATTAGGATATTGGCTTATTGTTAAGCCCAATTTTGAGCAATTGGAAATACAGGAAG
CCCAGGAAATTGCTTTGAAAACAGAGTTTGAAAAAAAGCAACATCAGGCAGCAAATCTACAAGCCTATCGTAATCAGCTA
CAGTTAATGAATGAACGCTTTGGGACTATGCTAAAACAACTTCCGGCGAAAAATGAAATGCCTGGGCTTTTGGAGGAAAT
ATCTAAAACGGGGATCGCATCGGGTTTGAAATTTGAATTGTTTGCACCACAACCTGAGGTAGTGCATGATTTTTATGTGG
AGTTACCTATAAAAATTACGATTGTCGGATCCTATATGCAATTGGCAAGATTTTTAAGTCGTGTAGCTGAAATGAACAGA
ATAGTGACTTTGCATGAATTTAGTGTTGAGGGGGTGTCCGGGGATGGTAAAACGGTCTCTCAGGATGAATTGGTGATGGC
TATCACTGCGAAAATATACAGATATCGGGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(49-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

99.497

100

1
  comO Acinetobacter baylyi ADP1

40.526

95.96

0.389