Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   K8O97_RS05325 Genome accession   NZ_CP082848
Coordinates   1150660..1151367 (-) Length   235 a.a.
NCBI ID   WP_027224586.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145660..1156367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS05310 (K8O97_05305) - 1148535..1149047 (-) 513 WP_027224583.1 pilus assembly protein -
  K8O97_RS05315 (K8O97_05310) - 1149044..1150111 (-) 1068 WP_027224584.1 PilW family protein -
  K8O97_RS05320 (K8O97_05315) pilV 1150108..1150647 (-) 540 WP_027224585.1 type IV pilus modification protein PilV -
  K8O97_RS05325 (K8O97_05320) fimT 1150660..1151367 (-) 708 WP_027224586.1 GspH/FimT family pseudopilin Machinery gene
  K8O97_RS05330 (K8O97_05325) - 1151597..1152457 (-) 861 WP_027224587.1 polysaccharide deacetylase family protein -
  K8O97_RS05335 (K8O97_05330) - 1152634..1153983 (-) 1350 WP_080031323.1 lpg0634 family Dot/Icm T4SS effector -
  K8O97_RS05340 (K8O97_05335) - 1154271..1155752 (+) 1482 WP_027224588.1 glycosyltransferase family 39 protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25032.68 Da        Isoelectric Point: 7.5939

>NTDB_id=602967 K8O97_RS05325 WP_027224586.1 1150660..1151367(-) (fimT) [Legionella pneumophila strain FDAARGOS_1482]
MNKVITESQKFTLHNIANMLFCVERSVLPTQSNIAQKIQTKGIMYNDLCKDSFDTEAPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWNSGWIVVTQPVAGTPTL
LKTHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGSTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=602967 K8O97_RS05325 WP_027224586.1 1150660..1151367(-) (fimT) [Legionella pneumophila strain FDAARGOS_1482]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCACAACATAGCAAATATGTTATTTTGCGTGGAGAGAAGTGT
ATTGCCCACACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGATAGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTTTAATTGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATAGGGCAGTCAATGTAGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAACTCAGGATGGATAGTGGTGACTCAACCAGTAGCAGGAACCCCAACGCTT
TTAAAAACGCATCAAACTTCTGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGAAATGCATTTGCCCGCTCGGCAATGGTTTTGGCCACCG
GATTTGTCCAATCCGGATCAACACCCGGCCAAGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(106-208)

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

96.17

100

0.962