Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   K8O97_RS02805 Genome accession   NZ_CP082848
Coordinates   627380..628072 (+) Length   230 a.a.
NCBI ID   WP_014843076.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 622380..633072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS02785 (K8O97_02785) - 623001..623177 (-) 177 WP_011945326.1 dodecin domain-containing protein -
  K8O97_RS02790 (K8O97_02790) - 623355..625823 (+) 2469 WP_014843073.1 hypothetical protein -
  K8O97_RS02795 (K8O97_02795) dapB 625927..626658 (-) 732 WP_014843074.1 4-hydroxy-tetrahydrodipicolinate reductase -
  K8O97_RS02800 (K8O97_02800) - 626838..627023 (-) 186 WP_014843075.1 hypothetical protein -
  K8O97_RS02805 (K8O97_02805) rocC 627380..628072 (+) 693 WP_014843076.1 ProQ/FinO family protein Regulator
  K8O97_RS02810 (K8O97_02810) - 628073..629140 (+) 1068 WP_014843077.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25801.66 Da        Isoelectric Point: 10.6432

>NTDB_id=602962 K8O97_RS02805 WP_014843076.1 627380..628072(+) (rocC) [Legionella pneumophila strain FDAARGOS_1482]
MRKQALHPRTAVINKAQKNQSKRARSDALSWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVEEVTEEEAEHASMKIKKRVEKSVKNARKLVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=602962 K8O97_RS02805 WP_014843076.1 627380..628072(+) (rocC) [Legionella pneumophila strain FDAARGOS_1482]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGTGCGCGATCTGA
CGCATTATCATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGAGGA
GGTTACTGAGGAAGAAGCGGAACATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
TAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.391

100

0.974