Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K8P08_RS13830 Genome accession   NZ_CP082847
Coordinates   3088796..3089344 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3083796..3094344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P08_RS13810 (K8P08_13850) aroK 3084526..3085053 (-) 528 WP_010946667.1 shikimate kinase AroK -
  K8P08_RS13815 (K8P08_13855) pilQ 3085499..3087595 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  K8P08_RS13820 (K8P08_13860) pilP 3087599..3088186 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  K8P08_RS13825 (K8P08_13865) pilO 3088183..3088782 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  K8P08_RS13830 (K8P08_13870) pilN 3088796..3089344 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  K8P08_RS13835 (K8P08_13875) pilM 3089348..3090412 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  K8P08_RS13840 (K8P08_13880) ravI 3090829..3091839 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=602953 K8P08_RS13830 WP_010946663.1 3088796..3089344(-) (pilN) [Legionella pneumophila strain FDAARGOS_1483]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=602953 K8P08_RS13830 WP_010946663.1 3088796..3089344(-) (pilN) [Legionella pneumophila strain FDAARGOS_1483]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995