Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K7B04_RS13715 Genome accession   NZ_CP082841
Coordinates   2935343..2935948 (+) Length   201 a.a.
NCBI ID   WP_223802252.1    Uniprot ID   -
Organism   Kluyvera sp. CRP     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930343..2940948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B04_RS13695 (K7B04_13660) - 2930713..2932473 (-) 1761 WP_223802251.1 Lon protease family protein -
  K7B04_RS13700 (K7B04_13665) matP 2932658..2933113 (+) 456 WP_167576277.1 macrodomain Ter protein MatP -
  K7B04_RS13705 (K7B04_13670) ompA 2933204..2934259 (-) 1056 WP_167576276.1 porin OmpA -
  K7B04_RS13710 (K7B04_13675) sulA 2934615..2935124 (-) 510 WP_163448561.1 SOS-induced cell division inhibitor SulA -
  K7B04_RS13715 (K7B04_13680) sxy/tfoX 2935343..2935948 (+) 606 WP_223802252.1 TfoX/Sxy family DNA transformation protein Regulator
  K7B04_RS13720 (K7B04_13685) yccS 2935949..2938075 (-) 2127 WP_167576274.1 YccS family putative transporter -
  K7B04_RS13725 (K7B04_13690) - 2938094..2938540 (-) 447 WP_223802253.1 YccF domain-containing protein -
  K7B04_RS13730 (K7B04_13695) helD 2938663..2940717 (+) 2055 WP_223802254.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23389.11 Da        Isoelectric Point: 10.6779

>NTDB_id=602895 K7B04_RS13715 WP_223802252.1 2935343..2935948(+) (sxy/tfoX) [Kluyvera sp. CRP]
MKIISYKRIYQSQEYFSVLGKVKSRALFGGYSLAVDNTVFAMVAEGELYLRACEKNATYQAQHSPPLLTVRKRGHAQQLN
YFRVDERLWSNRAELLLLGQFALEDAQSEKRRRRHLRLKDLPNLSFHMELLLHEAGIKDVRTLRQMGSKTAWMRLRQLRK
QLSVNVLYSLEGAIIGVHAAALPAKTRQELETWVQNYTQKR

Nucleotide


Download         Length: 606 bp        

>NTDB_id=602895 K7B04_RS13715 WP_223802252.1 2935343..2935948(+) (sxy/tfoX) [Kluyvera sp. CRP]
ATGAAGATTATCTCTTATAAACGGATTTACCAATCCCAGGAATATTTCTCGGTGTTGGGGAAAGTGAAGTCTCGGGCACT
GTTTGGCGGCTATAGTCTGGCCGTCGACAATACCGTCTTTGCTATGGTCGCAGAAGGTGAGCTGTATCTGAGGGCGTGCG
AAAAAAACGCCACCTATCAGGCCCAGCACTCACCGCCACTGTTAACGGTACGTAAACGAGGGCATGCGCAGCAGCTTAAC
TATTTTCGCGTCGATGAACGGCTGTGGTCGAATAGAGCAGAACTGCTTTTGCTTGGTCAGTTCGCGCTTGAAGATGCGCA
AAGTGAGAAGCGTCGACGGCGGCATTTACGGCTCAAAGATCTTCCCAATCTCTCTTTTCATATGGAACTGCTGTTGCATG
AAGCAGGTATTAAGGACGTCCGTACGCTGCGGCAAATGGGTTCTAAAACGGCGTGGATGCGGCTTCGGCAGTTACGTAAA
CAGCTGAGTGTGAATGTGTTGTATTCGCTGGAAGGGGCTATCATCGGTGTTCACGCCGCGGCGCTCCCGGCGAAAACGCG
CCAGGAGCTGGAAACGTGGGTGCAAAATTACACCCAGAAAAGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.95

100

0.552