Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K7399_RS06155 Genome accession   NZ_CP082837
Coordinates   1336214..1337914 (-) Length   566 a.a.
NCBI ID   WP_028976396.1    Uniprot ID   -
Organism   Sporolactobacillus terrae strain EFEL7003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1331214..1342914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7399_RS06135 (K7399_06115) - 1331653..1332963 (+) 1311 WP_223362449.1 IS1380 family transposase -
  K7399_RS16290 (K7399_06120) - 1333193..1333384 (-) 192 WP_223362587.1 DUF6241 domain-containing protein -
  K7399_RS06145 (K7399_06125) spo0A 1333799..1334587 (-) 789 WP_172969042.1 sporulation transcription factor Spo0A -
  K7399_RS06150 (K7399_06130) spoIVB 1334798..1336081 (-) 1284 WP_028976395.1 SpoIVB peptidase -
  K7399_RS06155 (K7399_06135) recN 1336214..1337914 (-) 1701 WP_028976396.1 DNA repair protein RecN Machinery gene
  K7399_RS06160 (K7399_06140) - 1338005..1338844 (-) 840 WP_028976397.1 TlyA family RNA methyltransferase -
  K7399_RS06165 (K7399_06145) dxs 1338841..1340757 (-) 1917 WP_028976398.1 1-deoxy-D-xylulose-5-phosphate synthase -
  K7399_RS06170 (K7399_06150) - 1340764..1341393 (-) 630 WP_028976399.1 hypothetical protein -
  K7399_RS06175 (K7399_06155) - 1341511..1341777 (-) 267 WP_028976400.1 hypothetical protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63769.30 Da        Isoelectric Point: 5.4034

>NTDB_id=602824 K7399_RS06155 WP_028976396.1 1336214..1337914(-) (recN) [Sporolactobacillus terrae strain EFEL7003]
MLTELQIINFAIIDKLNVSFEDGLTVFTGETGAGKSIIIDAIALLGGARGSADYVRHGAKKAELEALFDIENNERVIQLL
DQLGLDHTDDQLILRRDIAHTGKSVCRVNGKLVTQSVLQQFGTLLIDIHGQHEHQRLLDPSKHLDFVDRFGGSTIEKLKQ
AYTEEYQKATKLAAQCSRYNQDEKEVAQRVDLLHYQIKDIEAGHLQKDEEEQLLEEKRKLLNYEKVFQTLKSSYGALDGE
HAALDLLRQTASGLDSIRDLDPELNHFSESVSNCFYLLEEQASSIRNYLEQMEYNPERLNEIEARLNEIQLLKRKYGNNV
DEILTYYVQIKKELDDLNSRDQNFDALHEALKAEIGVLRDCAVQLSRARKQTSGKLARAINHEFKDLCMEHALIDLHVKM
NGNLESFSGFSSEGIDHVSFYITTNPGEPFKPLAKVASGGELSRVMLAMKTVFRKVIGPVTIVFDEVDTGVSGQAAQAMA
EKISSLSQNAQVFCITHLPQVAAMADQHISIEKYVTKDERTHTHVKTLDDAEKVQEISRMISGPLMTDLAREHAKELIQL
AEKIKQ

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=602824 K7399_RS06155 WP_028976396.1 1336214..1337914(-) (recN) [Sporolactobacillus terrae strain EFEL7003]
GTGCTAACAGAACTTCAAATTATAAATTTTGCAATTATAGACAAACTGAATGTGTCTTTTGAAGACGGACTGACTGTATT
TACTGGTGAAACCGGTGCGGGAAAGTCAATCATTATTGATGCCATTGCCTTGCTTGGCGGGGCACGCGGCTCAGCTGATT
ATGTCCGGCATGGTGCAAAAAAGGCTGAGCTTGAGGCGTTATTTGATATCGAAAATAATGAGCGGGTCATTCAATTGCTT
GATCAGTTAGGTTTAGATCACACCGATGACCAGTTAATCCTCAGGCGCGATATCGCACATACTGGGAAAAGTGTCTGTCG
TGTCAACGGCAAGCTCGTGACTCAGTCCGTTCTGCAGCAGTTCGGTACGCTTCTGATCGACATTCATGGGCAGCACGAAC
ATCAGCGCCTTCTCGATCCTTCGAAACATCTCGACTTTGTTGATCGATTTGGAGGGTCGACTATTGAAAAGCTGAAGCAG
GCTTATACAGAAGAATATCAAAAAGCAACGAAGCTTGCCGCTCAATGCAGCCGCTATAATCAGGACGAAAAAGAAGTAGC
ACAGCGAGTCGATTTGCTTCACTACCAGATAAAGGATATTGAAGCCGGTCATCTGCAGAAAGATGAAGAGGAACAGCTGC
TCGAGGAAAAAAGAAAGCTGTTGAATTATGAAAAAGTATTTCAAACGCTTAAATCCAGCTATGGCGCACTTGATGGTGAA
CATGCGGCCTTGGATCTGCTTCGTCAAACCGCTTCCGGCCTTGACTCGATTCGCGATCTCGACCCTGAGCTGAATCATTT
TTCTGAGTCTGTCTCGAATTGTTTCTATCTGCTTGAAGAGCAAGCCTCATCGATCCGCAATTATTTGGAGCAGATGGAAT
ATAATCCGGAACGGCTGAATGAAATTGAAGCACGCTTAAATGAAATTCAGCTTTTGAAAAGGAAATACGGAAATAATGTG
GACGAAATTTTAACTTATTATGTGCAAATAAAAAAAGAACTCGATGACTTGAATTCACGCGACCAAAATTTCGATGCCCT
GCATGAAGCATTGAAAGCTGAAATTGGCGTATTGAGAGACTGTGCCGTTCAATTATCCAGAGCGCGAAAACAAACAAGCG
GGAAACTGGCGCGTGCCATTAATCATGAGTTTAAAGATCTGTGTATGGAGCATGCTTTGATTGATCTTCACGTGAAGATG
AATGGTAATCTTGAGTCATTTTCCGGATTCAGTTCAGAAGGCATTGATCATGTTTCCTTTTATATAACCACCAATCCTGG
TGAACCATTCAAACCGCTGGCAAAGGTTGCCTCAGGTGGCGAGCTTTCACGAGTTATGCTTGCAATGAAGACGGTGTTCA
GAAAAGTGATTGGTCCGGTAACCATTGTCTTTGATGAGGTGGACACTGGGGTCAGCGGCCAAGCAGCACAAGCCATGGCG
GAGAAAATCAGTTCGCTTTCTCAAAACGCGCAAGTATTTTGTATTACCCATCTCCCTCAAGTTGCAGCCATGGCCGACCA
GCATATCTCTATTGAAAAATACGTGACTAAAGATGAACGTACCCATACGCATGTCAAAACGTTGGATGACGCTGAAAAAG
TACAAGAAATTAGCAGAATGATTTCGGGTCCGTTGATGACTGATCTTGCTCGGGAACACGCAAAAGAACTTATTCAATTG
GCGGAAAAAATCAAACAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.873

100

0.498