Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NHZ69_RS01910 Genome accession   NZ_CP099797
Coordinates   417525..418898 (+) Length   457 a.a.
NCBI ID   WP_023127782.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAO1-N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412525..423898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHZ69_RS01890 (NHZ69_01890) - 413362..413928 (-) 567 WP_003084491.1 hypothetical protein -
  NHZ69_RS01895 (NHZ69_01895) rsmD 413931..414527 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NHZ69_RS01900 (NHZ69_01900) - 414527..416014 (-) 1488 WP_003112971.1 pitrilysin family protein -
  NHZ69_RS01905 (NHZ69_01905) - 416007..417404 (-) 1398 WP_010895504.1 pitrilysin family protein -
  NHZ69_RS01910 (NHZ69_01910) pilA 417525..418898 (+) 1374 WP_023127782.1 signal recognition particle-docking protein FtsY Machinery gene
  NHZ69_RS01915 (NHZ69_01915) ftsE 418895..419566 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  NHZ69_RS01920 (NHZ69_01920) ftsX 419566..420573 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  NHZ69_RS01925 (NHZ69_01925) rpoH 420687..421541 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  NHZ69_RS01930 (NHZ69_01930) - 421606..422211 (+) 606 WP_003084511.1 hypothetical protein -
  NHZ69_RS01935 (NHZ69_01935) mtgA 422216..422947 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NHZ69_RS01940 (NHZ69_01940) - 422984..423361 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  NHZ69_RS01945 (NHZ69_01945) thiS 423464..423664 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48618.05 Da        Isoelectric Point: 4.5033

>NTDB_id=602805 NHZ69_RS01910 WP_023127782.1 417525..418898(+) (pilA) [Pseudomonas aeruginosa strain PAO1-N]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLS
KTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVE
QPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSAS
VIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTG
LALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=602805 NHZ69_RS01910 WP_023127782.1 417525..418898(+) (pilA) [Pseudomonas aeruginosa strain PAO1-N]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCCCGTCGCACA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTG
CGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCC
AAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGA
CATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGG
CGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAG
CAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCAC
CATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCG
CCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCG
GTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATAC
CAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCC
TGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGC
CTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCG
CTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGC
GGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(167-232)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.697

96.061

0.449