Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K7R23_RS21315 Genome accession   NZ_CP082833
Coordinates   4463162..4463791 (-) Length   209 a.a.
NCBI ID   WP_012905344.1    Uniprot ID   D2TS89
Organism   Citrobacter rodentium NBRC 105723 = DSM 16636     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4458162..4468791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7R23_RS21300 (K7R23_21135) helD 4458405..4460459 (-) 2055 WP_012905347.1 DNA helicase IV -
  K7R23_RS21305 (K7R23_21140) - 4460582..4461028 (+) 447 WP_024132585.1 YccF domain-containing protein -
  K7R23_RS21310 (K7R23_21145) yccS 4461046..4463208 (+) 2163 WP_012905345.1 YccS family putative transporter -
  K7R23_RS21315 (K7R23_21150) sxy/tfoX 4463162..4463791 (-) 630 WP_012905344.1 TfoX/Sxy family DNA transformation protein Regulator
  K7R23_RS21320 (K7R23_21155) sulA 4464009..4464518 (+) 510 WP_024132584.1 SOS-induced cell division inhibitor SulA -
  K7R23_RS21325 (K7R23_21160) ompA 4464875..4465930 (+) 1056 WP_012905342.1 porin OmpA -
  K7R23_RS21330 (K7R23_21165) matP 4466013..4466465 (-) 453 WP_024132582.1 macrodomain Ter protein MatP -
  K7R23_RS21335 (K7R23_21170) - 4466651..4468411 (+) 1761 WP_012905340.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24413.38 Da        Isoelectric Point: 9.5366

>NTDB_id=602785 K7R23_RS21315 WP_012905344.1 4463162..4463791(-) (sxy/tfoX) [Citrobacter rodentium NBRC 105723 = DSM 16636]
MKVHSYDRIYKSQEYLSSLGNIQYRSLFGSYSLTIQDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVMLN
YYQVDESLWRDQQQLIRLSKFSLDAALQEKLRRGAQRRLKDLPNMTFHLESLLNEVGINDVSTLRILGAKMCWLRLKQLN
KSITDKILYILEGAIYGVHEAALPATRRRELAEWVKSLAQEPMYPLKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=602785 K7R23_RS21315 WP_012905344.1 4463162..4463791(-) (sxy/tfoX) [Citrobacter rodentium NBRC 105723 = DSM 16636]
ATGAAAGTTCACTCCTATGACAGGATCTATAAATCGCAAGAATACTTATCTTCGCTGGGTAATATTCAGTACCGTTCGCT
GTTCGGCAGTTACAGTCTGACTATCCAGGATACCGTCTTTGCAATGGTTGCTGACGGCGAGCTTTATCTGCGCGCCTGCG
AGCAGAGCGTACAGTATTGTGTGAAACACTCCCCTGTCTGGCTGACCTTTATGAAACGCGGGCGTCCCGTTATGCTCAAT
TACTATCAGGTGGATGAAAGTCTCTGGCGCGATCAGCAACAGCTGATCCGTTTATCGAAATTTTCCCTTGATGCGGCATT
GCAAGAGAAACTCAGGCGCGGCGCTCAGCGTCGGTTAAAGGATCTGCCCAATATGACCTTTCATCTGGAGAGTTTACTTA
ATGAGGTGGGGATTAATGACGTCAGCACGTTACGCATCCTGGGGGCAAAAATGTGCTGGCTGCGTCTGAAGCAGCTCAAT
AAATCGATAACCGACAAAATTCTTTATATTCTCGAAGGGGCGATTTATGGCGTTCATGAAGCGGCGCTCCCGGCGACGCG
CCGCCGGGAGCTTGCTGAGTGGGTTAAATCGCTGGCGCAGGAGCCGATGTATCCGCTGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2TS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.813

100

0.708