Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NH020_RS18150 Genome accession   NZ_CP099754
Coordinates   3763567..3764172 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 806883-9-2019     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3758567..3769172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH020_RS18130 (NH020_18130) aes 3758708..3759667 (+) 960 WP_001357009.1 acetyl esterase -
  NH020_RS18135 (NH020_18135) hemH 3759664..3760626 (-) 963 WP_001250117.1 ferrochelatase -
  NH020_RS18140 (NH020_18140) adk 3760758..3761402 (-) 645 WP_001220233.1 adenylate kinase -
  NH020_RS18145 (NH020_18145) htpG 3761583..3763457 (-) 1875 WP_022645285.1 molecular chaperone HtpG -
  NH020_RS18150 (NH020_18150) recR 3763567..3764172 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NH020_RS18155 (NH020_18155) ybaB 3764172..3764501 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NH020_RS18160 (NH020_18160) dnaX 3764554..3766485 (-) 1932 WP_022645284.1 DNA polymerase III subunit gamma/tau -
  NH020_RS18165 (NH020_18165) apt 3766614..3767165 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NH020_RS18170 (NH020_18170) ybaN 3767318..3767695 (-) 378 WP_022645283.1 DUF454 family protein -
  NH020_RS18175 (NH020_18175) priC 3767765..3768292 (+) 528 WP_022645282.1 primosomal replication protein N'' -
  NH020_RS18180 (NH020_18180) rsmS 3768306..3768470 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=602774 NH020_RS18150 WP_001195025.1 3763567..3764172(-) (recR) [Escherichia coli strain 806883-9-2019]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=602774 NH020_RS18150 WP_001195025.1 3763567..3764172(-) (recR) [Escherichia coli strain 806883-9-2019]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443