Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B75_RS15875 Genome accession   NZ_CP082831
Coordinates   3195920..3196549 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain SCAID WND1-2021 (1/128)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3190920..3201549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B75_RS15860 (K8B75_15860) helD 3191162..3193216 (-) 2055 WP_001295938.1 DNA helicase IV -
  K8B75_RS15865 (K8B75_15865) yccF 3193339..3193785 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K8B75_RS15870 (K8B75_15870) yccS 3193795..3195957 (+) 2163 WP_000875041.1 YccS family putative transporter -
  K8B75_RS15875 (K8B75_15875) sxy/tfoX 3195920..3196549 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B75_RS15880 (K8B75_15880) sulA 3196768..3197277 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  K8B75_RS15885 (K8B75_15885) ompA 3197633..3198685 (+) 1053 WP_001346420.1 porin OmpA -
  K8B75_RS15890 (K8B75_15890) matP 3198761..3199213 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B75_RS15895 (K8B75_15895) ycbZ 3199399..3201159 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=602756 K8B75_RS15875 WP_000839151.1 3195920..3196549(-) (sxy/tfoX) [Escherichia coli strain SCAID WND1-2021 (1/128)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=602756 K8B75_RS15875 WP_000839151.1 3195920..3196549(-) (sxy/tfoX) [Escherichia coli strain SCAID WND1-2021 (1/128)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995