Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B79_RS15775 Genome accession   NZ_CP082824
Coordinates   3192335..3192964 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SCAID URN1-2021 (19/278)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187335..3197964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B79_RS15760 (K8B79_15760) helD 3187577..3189631 (-) 2055 WP_001538528.1 DNA helicase IV -
  K8B79_RS15765 (K8B79_15765) yccF 3189754..3190200 (+) 447 WP_001261236.1 YccF domain-containing protein -
  K8B79_RS15770 (K8B79_15770) yccS 3190210..3192372 (+) 2163 WP_000875041.1 YccS family putative transporter -
  K8B79_RS15775 (K8B79_15775) sxy/tfoX 3192335..3192964 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B79_RS15780 (K8B79_15780) sulA 3193183..3193692 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  K8B79_RS15785 (K8B79_15785) ompA 3194048..3195088 (+) 1041 WP_001313715.1 porin OmpA -
  K8B79_RS15790 (K8B79_15790) matP 3195166..3195618 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B79_RS15795 (K8B79_15795) ycbZ 3195804..3197564 (+) 1761 WP_000156498.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=602711 K8B79_RS15775 WP_000839136.1 3192335..3192964(-) (sxy/tfoX) [Escherichia coli strain SCAID URN1-2021 (19/278)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=602711 K8B79_RS15775 WP_000839136.1 3192335..3192964(-) (sxy/tfoX) [Escherichia coli strain SCAID URN1-2021 (19/278)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99