Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K8B71_RS28485 Genome accession   NZ_CP082823
Coordinates   5883244..5884836 (+) Length   530 a.a.
NCBI ID   WP_223119639.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5878244..5889836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B71_RS28465 (K8B71_28465) pgeF 5879994..5880722 (-) 729 WP_003134928.1 peptidoglycan editing factor PgeF -
  K8B71_RS28470 (K8B71_28470) rluD 5880719..5881681 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8B71_RS28475 (K8B71_28475) - 5881827..5882852 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  K8B71_RS28480 (K8B71_28480) - 5883009..5883254 (+) 246 WP_014603563.1 PP0621 family protein -
  K8B71_RS28485 (K8B71_28485) pilS 5883244..5884836 (+) 1593 WP_223119639.1 two-component system sensor histidine kinase PilS Regulator
  K8B71_RS28490 (K8B71_28490) pilR 5884851..5886185 (+) 1335 Protein_5664 two-component system response regulator PilR -
  K8B71_RS28495 (K8B71_28495) - 5886229..5886621 (-) 393 WP_223119640.1 FAD-dependent oxidoreductase -
  K8B71_RS34600 - 5886936..5887082 (+) 147 WP_225932743.1 hypothetical protein -
  K8B71_RS28505 (K8B71_28505) - 5887082..5888161 (+) 1080 WP_043095166.1 type II secretion system F family protein -
  K8B71_RS28510 (K8B71_28510) - 5888183..5888713 (+) 531 WP_003141434.1 type 4 pilus major pilin -
  K8B71_RS28515 (K8B71_28515) - 5888710..5889651 (+) 942 WP_003134125.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58952.12 Da        Isoelectric Point: 6.5650

>NTDB_id=602681 K8B71_RS28485 WP_223119639.1 5883244..5884836(+) (pilS) [Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)]
MRAERLRLSEEQGQRILRLYHLYRLTIGLVLVLLISSELEDQVLKLVHPELFHVGSWCYLVFNILVALFLPPSRQLLPIF
ILALTDVLMLCGLFYAGGGVPSGIGSLLVVAVAIANILLRGRIGLVIAAAASLGLLYLTFFLSLSSPDATNHYVQAGGLG
TLCFAAALVIQALVRRQEQTETLAEERAETVANLEELNALILQRMRTGILVVDSRQAILLANQAALGLLRQDDVQGASLG
RHSPMLMHCMKQWRLNPSLRPPTLKVVPDGPTVQPSFISLNREDDQHVLIFLEDISQIAQQAQQMKLAGLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQLSRRRQAEPQQLDLKEWLQRFVDEYPGRLRND
SELHLQLGAGDIQTRMDPHQLNQVLSNLVQNGLRYSAQAHGRGQVWLSLARDPESDLPVLEVIDDGPGVPADKLNNLFEP
FLTTESKGTGLGLYLSRELCESNQARIDYRNREEGGGCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=602681 K8B71_RS28485 WP_223119639.1 5883244..5884836(+) (pilS) [Pseudomonas aeruginosa strain SCAID TST-2021 (7/157)]
GTGCGCGCTGAACGGCTACGGCTGAGCGAGGAGCAGGGGCAACGCATCCTCCGTCTGTACCACCTGTACCGCCTGACCAT
CGGCCTGGTACTGGTCCTGCTGATCTCCAGCGAACTGGAAGATCAGGTCCTCAAGCTCGTCCACCCTGAACTGTTCCATG
TCGGCAGTTGGTGCTACCTGGTCTTCAACATCCTGGTCGCGCTGTTCCTGCCGCCGTCACGGCAATTGCTGCCGATCTTC
ATCCTCGCGCTCACCGACGTGCTGATGCTTTGCGGCCTGTTCTACGCAGGTGGCGGCGTACCCAGCGGCATCGGCAGCCT
GCTGGTGGTGGCGGTGGCCATTGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGGTCATCGCGGCGGCGGCCAGCCTCG
GCCTGCTCTACCTGACCTTCTTCCTCAGCCTGAGCAGTCCGGACGCCACCAACCACTACGTCCAGGCCGGCGGCCTCGGC
ACCCTGTGCTTCGCCGCCGCGCTGGTGATCCAGGCTCTGGTGCGGCGCCAGGAGCAGACCGAAACGCTGGCCGAAGAACG
CGCCGAGACGGTCGCCAACCTGGAGGAACTCAACGCATTGATCCTGCAGCGCATGCGCACCGGCATCCTCGTGGTCGATA
GCCGTCAGGCCATCCTCCTCGCCAACCAGGCCGCCCTCGGCCTGCTCAGGCAGGACGACGTGCAGGGCGCCAGCCTCGGC
CGCCACAGCCCGATGCTGATGCACTGCATGAAGCAATGGCGCCTGAATCCCAGCCTCCGTCCGCCGACGCTCAAGGTGGT
GCCGGACGGCCCGACGGTGCAACCCAGCTTTATCAGCCTCAACCGCGAAGACGACCAGCACGTGCTGATCTTCCTCGAAG
ACATTTCGCAGATCGCCCAGCAGGCGCAGCAGATGAAGCTGGCCGGTCTCGGCCGCCTGACCGCCGGCATCGCCCATGAG
ATCCGCAACCCGCTGGGCGCGATCAGCCACGCCGCCCAACTGCTGCAGGAGTCAGAGGAACTGGATGCCCCGGACCGACG
GCTGACGCAGATCATCCAGGACCAGTCGAAGCGGATGAACCTGGTCATCGAGAACGTCCTGCAGCTCTCCCGTCGCCGCC
AGGCCGAACCGCAGCAGCTCGACCTGAAGGAGTGGCTTCAGCGGTTCGTCGACGAATATCCCGGCAGGCTGCGCAACGAC
AGCGAACTGCACCTGCAGCTCGGTGCCGGCGACATCCAGACCCGCATGGACCCACACCAGTTGAACCAGGTGCTGAGCAA
CCTGGTGCAGAACGGTCTTCGCTACAGCGCCCAGGCGCACGGGCGCGGCCAGGTCTGGCTGAGCCTCGCGCGCGACCCGG
AGAGCGACCTGCCGGTGCTGGAAGTCATCGACGACGGTCCCGGCGTACCGGCGGACAAACTGAACAACCTGTTCGAACCC
TTCCTTACTACAGAAAGCAAAGGCACCGGCCTGGGCCTCTATCTCTCCCGCGAACTCTGCGAGAGCAACCAGGCACGGAT
CGACTACCGCAATCGCGAGGAAGGCGGCGGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACTCAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

99.623

100

0.996