Detailed information NTG0602679

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NHF43_RS13130
• Genome accession: NZ_CP099752
• Coordinates: 2735261..2736286 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 806883-11-2019
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2730261..2741286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHF43_RS13120 (NHF43_13100)	rpmE	2732492..2732704 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NHF43_RS13125 (NHF43_13105)	priA	2732907..2735105 (+)	2199	WP_001351585.1	primosomal protein N'	Machinery gene
NHF43_RS13130 (NHF43_13110)	cytR	2735261..2736286 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NHF43_RS13135 (NHF43_13115)	ftsN	2736378..2737337 (+)	960	WP_000068834.1	cell division protein FtsN	-
NHF43_RS13140 (NHF43_13120)	hslV	2737430..2737960 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NHF43_RS13145 (NHF43_13125)	hslU	2737970..2739301 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
NHF43_RS13150 (NHF43_13130)	menA	2739368..2740294 (+)	927	WP_001307494.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NHF43_RS13155 (NHF43_13135)	rraA	2740387..2740872 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NHF43_RS13160 (NHF43_13140)	zapB	2740957..2741202 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=602679 NHF43_RS13130 WP_000644904.1 2735261..2736286(+) (cytR) [Escherichia coli strain 806883-11-2019]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=602679 NHF43_RS13130 WP_000644904.1 2735261..2736286(+) (cytR) [Escherichia coli strain 806883-11-2019]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628