Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   K8B72_RS28805 Genome accession   NZ_CP082821
Coordinates   5942031..5942588 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCAID PLC1-2021 (16/222)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5937031..5947588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B72_RS28785 (K8B72_28785) pilR 5938307..5939644 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  K8B72_RS28790 (K8B72_28790) thiO 5939690..5940784 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  K8B72_RS28795 (K8B72_28795) - 5940919..5941428 (+) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  K8B72_RS28800 (K8B72_28800) - 5941534..5942040 (+) 507 WP_003134935.1 Tfp pilus assembly protein FimT/FimU -
  K8B72_RS28805 (K8B72_28805) pilV 5942031..5942588 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  K8B72_RS28810 (K8B72_28810) pilW 5942585..5943409 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  K8B72_RS28815 (K8B72_28815) pilX 5943406..5943993 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  K8B72_RS28820 (K8B72_28820) pilY1 5944005..5947490 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=602615 K8B72_RS28805 WP_003110422.1 5942031..5942588(+) (pilV) [Pseudomonas aeruginosa strain SCAID PLC1-2021 (16/222)]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=602615 K8B72_RS28805 WP_003110422.1 5942031..5942588(+) (pilV) [Pseudomonas aeruginosa strain SCAID PLC1-2021 (16/222)]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984