Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HK90_RS04725 Genome accession   NC_021827
Coordinates   908648..910453 (+) Length   601 a.a.
NCBI ID   WP_003724606.1    Uniprot ID   A0A3D7VFE2
Organism   Listeria monocytogenes     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 903648..915453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK90_RS04700 (M644_04780) - 903692..904768 (+) 1077 WP_003722316.1 ABC transporter ATP-binding protein -
  HK90_RS04705 (M644_04785) - 904765..905733 (+) 969 WP_003724609.1 ABC transporter ATP-binding protein -
  HK90_RS04710 (M644_04790) spxA 906053..906448 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  HK90_RS04715 (M644_04795) mecA 906681..907334 (+) 654 WP_003724608.1 adaptor protein MecA -
  HK90_RS04720 (M644_04800) - 907460..908575 (+) 1116 WP_003740782.1 competence protein CoiA -
  HK90_RS04725 (M644_04805) pepF 908648..910453 (+) 1806 WP_003724606.1 oligoendopeptidase F Regulator
  HK90_RS04730 (M644_04810) - 910752..911012 (+) 261 WP_003724605.1 DUF3116 family protein -
  HK90_RS04735 (M644_04815) isdC 911223..911849 (+) 627 WP_003724604.1 heme uptake protein IsdC -
  HK90_RS04740 (M644_04820) hbp2 911862..913571 (+) 1710 WP_003724603.1 hemin/hemoglobin-binding protein Hbp2 -
  HK90_RS04745 (M644_04825) isdE 913658..914530 (+) 873 WP_003727849.1 heme ABC transporter substrate-binding protein IsdE -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68550.63 Da        Isoelectric Point: 4.5488

>NTDB_id=60260 HK90_RS04725 WP_003724606.1 908648..910453(+) (pepF) [Listeria monocytogenes]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQEGV
ALTADYLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=60260 HK90_RS04725 WP_003724606.1 908648..910453(+) (pepF) [Listeria monocytogenes]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
CGATGAAGCTTGGGAACAAGCATTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
AAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCTGAAATTTTAGCTATGGACGAAAGCGTTTTAAAACAATTTTTAAATGAGAACA
AAGATTTACAATTATATGCGCATTTACTAGAAGAGTTAAATCTAAGCCGACCGTATATTTTAAGTGAGAAAGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGCAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACCATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGTAATGATCCGC
GAGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGCCTAAAAAACACCTTAGCCTCTACTTTGAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCTTCCACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCCTTGTTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTACGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAGTTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTGATGGAAAATAAAGGAAAACGTAGTGGAGCCTATTCTTCTGGTTCGTATAGTACGAGTC
CTTATATTTTACTCAATTGGCAGGATAATATTAATAATGTTTACACACTTGCGCATGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAACCAACCATTTGTTTATGGTGATTATTCGATTTTCTTAGCGGAGGTTGCTTCGACAACAAATGA
AAATTTACTAACTGATTATCTTCTTAAGAAATATGATGATCCAAAAGTTCGTGCTTACTTGTTGAATCACTATTTGGATG
GATTCAAGGGTACTGTATTCCGTCAAACCCAATTTGCTGAATTTGAACATGCTATTCATCAAGCGGATCAAGAAGGAGTG
GCGCTGACTGCGGATTACTTGACCGAAACATATTTTGATATTAACAAGAAATATTACGGAGAAGCGATGGTTTATGATGC
TGAAATCGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTGTTCCAATATGCAACTGGTTTTTCTG
CAGCATCTGCATTGAGTGCGAAGATTTTAACAGAAGGCCAAGAAGCGGTGACTGCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGATGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D7VFE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.014

98.502

0.503

Multiple sequence alignment