Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NH569_RS09205 Genome accession   NZ_CP099721
Coordinates   1932684..1934111 (-) Length   475 a.a.
NCBI ID   WP_001513843.1    Uniprot ID   -
Organism   Escherichia coli strain EC21GDE043     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927684..1939111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH569_RS09175 (NH569_09175) yeeZ 1927739..1928563 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NH569_RS09180 (NH569_09180) yeeY 1928609..1929538 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NH569_RS09185 (NH569_09185) yoeI 1929753..1929815 (+) 63 WP_010723108.1 membrane protein YoeI -
  NH569_RS09190 (NH569_09190) plaP 1929805..1931163 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NH569_RS09195 (NH569_09195) tsuA 1931342..1932400 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NH569_RS09200 (NH569_09200) tsuB 1932414..1932641 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NH569_RS09205 (NH569_09205) sbcB 1932684..1934111 (-) 1428 WP_001513843.1 exodeoxyribonuclease I Machinery gene
  NH569_RS09210 (NH569_09210) dacD 1934320..1935486 (+) 1167 WP_001513842.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NH569_RS09215 (NH569_09215) sbmC 1935605..1936078 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NH569_RS09220 (NH569_09220) yeeA 1936276..1937334 (+) 1059 WP_001200888.1 FUSC family protein -
  NH569_RS09225 (NH569_09225) tmaR 1937506..1937835 (+) 330 WP_000450409.1 DUF496 family protein -
  NH569_RS09230 (NH569_09230) - 1937936..1938118 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NH569_RS09235 (NH569_09235) - 1938190..1938318 (+) 129 Protein_1811 transposase domain-containing protein -
  NH569_RS09240 (NH569_09240) - 1938607..1938687 (-) 81 Protein_1812 hypothetical protein -
  NH569_RS09245 (NH569_09245) yeeW 1938733..1938927 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54426.73 Da        Isoelectric Point: 5.4720

>NTDB_id=602595 NH569_RS09205 WP_001513843.1 1932684..1934111(-) (sbcB) [Escherichia coli strain EC21GDE043]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFAPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=602595 NH569_RS09205 WP_001513843.1 1932684..1934111(-) (sbcB) [Escherichia coli strain EC21GDE043]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCGCGCCAGAGTTTTTGCAGGGTTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581