Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NEE09_RS02260 Genome accession   NZ_CP099641
Coordinates   415558..416517 (-) Length   319 a.a.
NCBI ID   WP_000777237.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410558..421517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS02230 scpB 411057..411626 (+) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -
  NEE09_RS02235 - 411613..412335 (+) 723 WP_001222228.1 pseudouridine synthase -
  NEE09_RS02240 yidD 412335..412577 (+) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  NEE09_RS02245 - 412802..413767 (-) 966 WP_000858263.1 siderophore ABC transporter substrate-binding protein -
  NEE09_RS02250 - 413863..414615 (-) 753 WP_000764303.1 ABC transporter ATP-binding protein -
  NEE09_RS02255 - 414612..415568 (-) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  NEE09_RS02260 ceuB 415558..416517 (-) 960 WP_000777237.1 ABC transporter permease Machinery gene
  NEE09_RS02265 - 416814..416924 (-) 111 WP_001108391.1 hypothetical protein -
  NEE09_RS02270 galE 416940..417641 (-) 702 WP_000167830.1 UDP-glucose 4-epimerase GalE -
  NEE09_RS02275 pepA 418042..419106 (+) 1065 WP_000209199.1 glutamyl aminopeptidase -
  NEE09_RS02280 - 419128..419424 (+) 297 WP_000230153.1 bacteriocin immunity protein -
  NEE09_RS02285 - 420106..420549 (+) 444 WP_000655200.1 MarR family winged helix-turn-helix transcriptional regulator -
  NEE09_RS02290 - 420553..421317 (+) 765 WP_000082881.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=602482 NEE09_RS02260 WP_000777237.1 415558..416517(-) (ceuB) [Streptococcus pneumoniae strain ATCC 700671]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSILFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=602482 NEE09_RS02260 WP_000777237.1 415558..416517(-) (ceuB) [Streptococcus pneumoniae strain ATCC 700671]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCCTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.742

97.179

0.367