Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NEE09_RS01325 Genome accession   NZ_CP099641
Coordinates   255093..257069 (+) Length   658 a.a.
NCBI ID   WP_000067859.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 250093..262069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS01305 - 250355..251218 (+) 864 WP_000252133.1 L-ribulose-5-phosphate 3-epimerase -
  NEE09_RS01310 - 251220..251924 (+) 705 WP_001077551.1 L-ribulose-5-phosphate 4-epimerase -
  NEE09_RS01315 - 252103..253776 (+) 1674 Protein_240 BglG family transcription antiterminator -
  NEE09_RS01320 ulaG 253888..254979 (+) 1092 WP_001134220.1 L-ascorbate 6-phosphate lactonase -
  NEE09_RS01325 recP/tkt 255093..257069 (+) 1977 WP_000067859.1 transketolase Machinery gene
  NEE09_RS01330 yajC 257186..257485 (+) 300 WP_001069051.1 preprotein translocase subunit YajC -
  NEE09_RS01335 - 257532..257960 (+) 429 WP_000737448.1 low molecular weight protein-tyrosine-phosphatase -
  NEE09_RS01340 - 257962..258372 (+) 411 WP_000429497.1 MORN repeat-containing protein -
  NEE09_RS01345 adhE 258672..261323 (+) 2652 WP_000763967.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71141.75 Da        Isoelectric Point: 4.8479

>NTDB_id=602463 NEE09_RS01325 WP_000067859.1 255093..257069(+) (recP/tkt) [Streptococcus pneumoniae strain ATCC 700671]
MSNLSVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFED
VSMDEIKSFRQWGSKTPGHPEFGHTAGIDATTGPLGQGISTATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTESVRDRYNAYGWHTALVENGTDLEAIHAAIETAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGADETASTRQALGWDYEPFEIPEQVYADFKEHVADRGASAYQAWTKLVADYKEAHPE
LAAEVEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDTNRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
AMPNLNVFRPADARETQAAWYLAVTSEKTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYENAADFDTILIATGSEVNLAV
SAAKELASQGEKIRVVSMPSTDVFDKQDAAYKEEILPNAVRRRVAVEMGASQNWYKYVGLDGAVLGIDTFGASAPAPKVL
AEYGFTVENLVKIVRNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=602463 NEE09_RS01325 WP_000067859.1 255093..257069(+) (recP/tkt) [Streptococcus pneumoniae strain ATCC 700671]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATTAATAAAGCCAACTCAGGTCATCCAGGTGT
GGTTATGGGAGCGGCTCCGATGGCTTACAGCCTCTTTACAAAACAACTTCATATCAATCCAGCTCAACCAAACTGGATTA
ACCGCGACCGCTTTATTCTTTCAGCAGGTCATGGTTCAATGCTCCTTTATGCTCTTCTTCACCTTTCTGGTTTTGAAGAT
GTCAGCATGGATGAGATTAAGAGTTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCATACGGCAGG
GATTGATGCTACGACAGGTCCTCTAGGGCAAGGGATTTCAACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCTTGGCAG
CCAAATATAACCGTGAAGGCTACAATATCTTTGACCACTATACTTACGTTATCTGTGGAGACGGAGACTTGATGGAAGGT
GTCTCAAGCGAGGCAGCTTCATACGCAGGTTTGCAAAAACTTGATAAGTTGGTTGTTCTTTATGATTCAAATGATATCAA
CTTGGATGGTGAGACAAAGGATTCCTTTACAGAAAGTGTTCGTGACCGTTACAATGCCTACGGTTGGCATACTGCCTTGG
TTGAAAATGGAACAGACTTGGAAGCCATCCATGCTGCTATCGAAACAGCAAAAGCTTCAGGCAAGCCATCTTTGATTGAA
GTGAAGACGGTTATTGGATACGGTTCTCCAAACAAACAAGGAACTAATGCTGTACACGGCGCCCCTCTTGGAGCAGATGA
AACTGCATCAACTCGTCAAGCCCTCGGTTGGGACTACGAACCATTTGAAATTCCAGAACAAGTATATGCTGATTTCAAAG
AACATGTTGCAGACCGTGGCGCATCAGCTTATCAAGCTTGGACTAAATTAGTTGCAGATTATAAAGAAGCTCATCCAGAA
CTGGCTGCAGAAGTAGAAGCCATCATCGACGGACGTGATCCAGTCGAAGTGACTCCAGCAGACTTCCCAGCTTTAGAAAA
TGGTTTTTCTCAAGCAACTCGTAATTCAAGTCAAGATGCCTTGAATGTTGTGGCAGCTAAATTACCAACCTTCCTAGGTG
GATCAGCTGACCTTGCTCACTCAAACATGACTTATATCAAGACGGATGGACTTCAAGACGATACCAATCGCTTGAATCGT
AACATTCAGTTTGGTGTTCGTGAATTTGCAATGGGAACAATCTTGAACGGGATGGCCCTTCATGGTGGACTTCGTGTATA
CGGTGGAACTTTCTTCGTCTTCTCTGACTATGTGAAGGCAGCTGTCCGCTTGTCAGCCTTACAAGGACTTCCTGTGACTT
ATGTCTTTACCCATGATTCAATCGCAGTTGGGGAAGATGGTCCGACTCACGAACCGGTTGAGCATTTAGCAGGTCTTCGT
GCTATGCCAAATCTAAATGTTTTCCGTCCAGCAGATGCGCGTGAAACGCAAGCAGCTTGGTACCTTGCAGTGACAAGTGA
GAAAACACCAACTGCCCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGATGGAACAGACTTCGACAAGGTTGCTAAAG
GTGCTTATGTTGTATATGAAAATGCAGCCGACTTTGATACCATCTTGATTGCGACAGGTTCAGAGGTTAATCTTGCTGTC
TCAGCTGCTAAAGAATTGGCTAGTCAAGGCGAAAAAATCCGCGTAGTCAGCATGCCATCTACAGATGTCTTTGATAAACA
AGATGCAGCTTACAAGGAAGAGATTCTTCCAAATGCAGTCCGCCGTCGTGTTGCAGTCGAAATGGGTGCAAGTCAAAACT
GGTACAAATATGTTGGTCTCGATGGTGCCGTTCTAGGTATTGATACCTTCGGAGCCTCTGCCCCAGCACCAAAAGTATTG
GCAGAATATGGCTTTACTGTAGAAAATCTTGTAAAAATTGTTCGAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(544-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.452

99.848

0.793